Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01273 ATGGCTTCAGAGGCAGAGATACCACATATTTCTCTTTTTGATAGGTTCGACCGAAACAGTGACATGTCTCTGTTTTTGCCCTTTCTCTTTGGCTTCTCGGACGCCACCCGAGGGCGAGATAGCGACGACCCAGATCACGAAAGGCCGGGCACTGAAGGTTCCCGTCGTCAAAGAATCATCTTGGTGAACCCCTTCACTCAGGGCATGGTGGTCATTGACGGTGCTTCAAACCTTGAAGCTCTGTTTCGTGAACTTGTAAGTGTAAAAGGTGGTCATCCACCGGCTTCTAAAGAGTCCATAGATGCCATGCCAAGTGTGGAAATCGAAGAGGGGTGTGAGGATTTGGAGTGTGTGGTTTGTTTGGAGGAGTTTGGGGTTGGTGGGGTGGCAAAGGAGATGCCTTGTAAGCATAGGTTTCATGCTAATTGTATCGAGAAGTGGTTGGGAATGCATGGTTCTTGCCCTGTGTGTAGGTATGAGATGCCTGTGGAGGAAGTGAATTGGGGAAAGAAGATTGAGGAGGAAGGGGGAGAGAGAAGGGGTGATAGTGTTAGTCGTCGTGGTGAGGTTTGGGTTAGTTTTTCGTTTAATACGGGTACGCGAGGCCAAGATCATCATCAAGCAGCTTCTGGTGTTTCAAATGAGGATTCTTCATCAACTCATGGAGACGATGCTGGAGAAAGTTAA 687 0.4847 MASEAEIPHISLFDRFDRNSDMSLFLPFLFGFSDATRGRDSDDPDHERPGTEGSRRQRIILVNPFTQGMVVIDGASNLEALFRELVSVKGGHPPASKESIDAMPSVEIEEGCEDLECVVCLEEFGVGGVAKEMPCKHRFHANCIEKWLGMHGSCPVCRYEMPVEEVNWGKKIEEEGGERRGDSVSRRGEVWVSFSFNTGTRGQDHHQAASGVSNEDSSSTHGDDAGES 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01273 228 SUPERFAMILY RING/U-box 110 163 - -
Pste1g01273 228 MobiDBLite consensus disorder prediction 197 219 - -
Pste1g01273 228 ProSiteProfiles Zinc finger RING-type profile. 117 158 IPR001841 -
Pste1g01273 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 52 162 - -
Pste1g01273 228 MobiDBLite consensus disorder prediction 37 56 - -
Pste1g01273 228 FunFam E3 ubiquitin-protein ligase RNF181 84 164 - -
Pste1g01273 228 SMART ring_2 117 157 IPR001841 -
Pste1g01273 228 Pfam Ring finger domain 116 158 IPR001841 -
Pste1g01273 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 164 IPR013083 -
Pste1g01273 228 MobiDBLite consensus disorder prediction 37 54 - -
Pste1g01273 228 MobiDBLite consensus disorder prediction 197 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01273 Pste-Chr1 4059974 4060660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01273 11 214 C3H Transcription Factor Family AT1G26800 54.146 7.41e-64 196
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01273 1 4059974 4060660 Pste1g01273 1 4059974 4060660 ECH