LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g01262	CTTCTTCTTCTTCTTCTTCTTCATTGCCCCTTACTAATACTAGTTCTAAGAACCCCATACCTCAATGGAGAACAACATGAATCCGTGGAATCTTATAACTACCAACTTTCTCTCTCAACAGGTTGCTTACCCTTCTCATCTTTTTCTAGAAGACATCCCTCACATGGGCAATTCCAGTGCTGTTGTGATCAAGGAGCCTAGAGGTTCACAGATGACAATCTTTTATGGTGGCCAAGTTATTGTCTTTGATGATATTCAAGCCGACAAAGCCAAGGACATCATGTCTTTTGCCAGAAAAGGAATGTCTCAAAACCAGAACGACTTTGCTTACACGTTTCCTGCTACTTCCACTCGACCATTTCCTTTTCTTATGAATATCATCCCTACTACTGCCAACAATTCGCTTCAAGACCACCCTCAACCACCTTCCAAAACTGTTATTTGTGGTAATTTTTTTGGATCTCTAATGTTTCAGAACATGGGTGATTGCTGTGTTAGTTTATGCAATTCTGATTCATTGCTTTTCGTTCAGATCTACCCTTGGCTAGGAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGAATAGAATTGCTGCCAGAGCACCATATCAAACAAGCAATCACATGGCAGCCCTTAGTAAGCCAGCTGAATCCATGCCTTGGCTCACCTTGGCACCTAACTCACCACAAGATGAATCTGATTCTGATAGCAACTCCAGCTTTGGGTTATTTTAACTACTTTTCTTGGACAAGGTGAAGAAGATTGTAGCATAGTTTGAGCCATGGAGAAAAAAGGACTTGGTCGATGTTGTTATTTTGATAAGCGAGTTAACAATTTTATGGGCTTCTCTCTAGCCCAATGCTGATTGTCAGGAGCTCATGATCAACGTTGTTCCTCATGCTTAGTATTATCGTAATTAATAGTGTAATTTTGGACAAAAGTAATGTAAATGTAGTTTGGTTAGCATAGTTTTGATATATTTTGAATCGTTCTTCTCAACTCTCATGATCACATATATTATATGTAAATTTTATGGTTAGGATTATCTTTTCGAATGCACAGCCTGTTTGTTATTGGTTTCCTACTAGAGTATGTAAGCGTCCTGTAATCACATTTTATCTTTTCTCAGGCTCTTGAATGTCTTCTCTCAAACTATCCTAGCTCATGCCATGCAGCAAAAAATGAGGTAGACTGAGGTGTAACAAGAATAACAATTGAGCAAATTGAAATGTGAAATACTGTGTATGTAATTATTATTTGGTATTGTTATAAAAATGTCCTCAAATAAGATCATTGC	1301	0.3797	MENNMNPWNLITTNFLSQQVAYPSHLFLEDIPHMGNSSAVVIKEPRGSQMTIFYGGQVIVFDDIQADKAKDIMSFARKGMSQNQNDFAYTFPATSTRPFPFLMNIIPTTANNSLQDHPQPPSKTVICGNFFGSLMFQNMGDCCVSLCNSDSLLFVQIYPWLGKLHFIGSWRKERIELLPEHHIKQAITWQPLVSQLNPCLGSPWHLTHHKMNLILIATPALGYFNYFSWTR	231

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g01262	231	Pfam	tify domain	45	76	IPR010399	-
	Pste1g01262	231	ProSiteProfiles	Tify domain profile.	43	78	IPR010399	-
	Pste1g01262	231	SMART	tify_2	43	78	IPR010399	-
	Pste1g01262	231	PANTHER	PROTEIN TIFY 4A-RELATED-RELATED	43	107	IPR040390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g01262	Pste-Chr1	4036522	4038203	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g01262	29	127	Tify Gene Family	AT1G74950	30.556	4.53e-10	55.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Tify	Pste1g01262		tify	3.1e-16	No_clan