LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g01255	CCTATTTTGAAACATTCTCTCTCTCCCTCCACCACATTTAGGGAACACCCGCATTTCTTTCTGTCACCCTCATTGCTCTTTTGTTATTTTCGTTTCTTGGGTCTGTTTATTTGCTGATTTTGTTTTGGATTTGGTGGCTTTCACCCTTCAAAATCGCTCTTTTAACAAAAACCATTTGAGCGATGAATTGTTGGGATCAGGTTCCTGTTGGCATCTCAGAGTTGGTGATGACAACCTCTGCAGTGCTAATTGCATCAAAAGCCAAAAGCCTTTGATTCTTGGAAAAGAGCTAAAAGGTTGGACGTTTCGTGGTGGCTGCTATCAAGATGGATTCAGAAGGCGAGGGTGTTAAGACACCAAAAGTGGAATTGGAAACAGAAGGGGCTCTGAATTCAAAGATAAAGGGTGTTGGAAACATAAGCAGTAAGGATATGATATTTAGAGCTGATAAAATTGATCTCAAGAGTTTGGATACTCAGTTGGAAAAGCACTTAAGCAGGGTTTGGTCGAGGAGCATTGAGTCAAAACGACCCAAAGAAGAATGGGAGGTTGATTTGGCCAAATTGGATTTACGATATGTTGTGGCTCGAGGGGCATATGGTATTGTGTACAAGGGCACATATGATAACCGAGATGTTGCAGTGAAAGTATTGGATTGGGGTGAGGATGGTGTAGTTACTGTTACAGAAGCTGCTGCTTTACGGGCATCCTTTAAGCAAGAAGTTGCTGTCTGGCACAAACTTGACCATCCAAATGTGACAAAATTTATTGGAGCTTCAATGGGCACCTCAAATCTTAAGATTCCATCACAAAATTATTCAAATGGGCGAGATGAAGAGTCCCTTCCTTCTAAGGCATGTTGTGTCATTGTTGAGTTTATATCTGGTGGGACACTAAAGCAATACTTGATAAAAAGTAGGAGGAAAAAACTTGCCTATAAGATTGTGATTCAACTGGCTTTGGACCTTGCTAGAGGTCTTAGTTATCTACATTCAAAGAGGATTGTTCATCGGGATGTTAAAACAGAGAATATGTTACTAGATAGTAGTCGGAATCTAAAAATAGCTGATTTTGGAGTCGCTCGGGTTGAAGCTATGAATCCAAGTGACATGACAGGTGAAACAGGAACCCTCGGATATATGGCCCCAGAGGTAGAAATTCCGAGGTGTTGTCCAAGTGCTTTAGCACATATCATGAGAAAATGCTGGGATGCAAATCCAAACAAGCGTCCAGAAATGGAAGAGGTGGTGAGAATGCTGGAAGCAATTGATACTAGCAAAGGTGGTGGAATGATACCTGAAGATCAGAGTCCAGGATGCTTTTGTTTTGCCCCTACCCGTGGTCCCTAA	1349	0.4181	MDSEGEGVKTPKVELETEGALNSKIKGVGNISSKDMIFRADKIDLKSLDTQLEKHLSRVWSRSIESKRPKEEWEVDLAKLDLRYVVARGAYGIVYKGTYDNRDVAVKVLDWGEDGVVTVTEAAALRASFKQEVAVWHKLDHPNVTKFIGASMGTSNLKIPSQNYSNGRDEESLPSKACCVIVEFISGGTLKQYLIKSRRKKLAYKIVIQLALDLARGLSYLHSKRIVHRDVKTENMLLDSSRNLKIADFGVARVEAMNPSDMTGETGTLGYMAPEVEIPRCCPSALAHIMRKCWDANPNKRPEMEEVVRMLEAIDTSKGGGMIPEDQSPGCFCFAPTRGP	340

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g01255	340	Pfam	Protein tyrosine and serine/threonine kinase	277	311	IPR001245	GO:0004672\|GO:0006468
	Pste1g01255	340	SMART	serkin_6	80	314	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g01255	340	SUPERFAMILY	Protein kinase-like (PK-like)	62	313	IPR011009	-
	Pste1g01255	340	ProSiteProfiles	Protein kinase domain profile.	80	340	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g01255	340	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	226	238	IPR008271	GO:0004672\|GO:0006468
	Pste1g01255	340	FunFam	Kinase suppressor of Ras 1	69	164	-	-
	Pste1g01255	340	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	277	315	-	-
	Pste1g01255	340	Pfam	Protein kinase domain	88	276	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g01255	340	Gene3D	Phosphorylase Kinase; domain 1	69	162	-	-
	Pste1g01255	340	Gene3D	Transferase(Phosphotransferase) domain 1	279	321	-	-
	Pste1g01255	340	Gene3D	Transferase(Phosphotransferase) domain 1	170	278	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g01255	Pste-Chr1	4020470	4024084	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g01255	1	340	MAP Kinase Kinase Kinase	AT3G22750	64.524	0.0	504

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Pste1g01255		Pkinase	5.8e-33	CL0016