Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01254 ATGAGAGCCGTAACTCAAGTAAGGAAACAGGTTTCATTCCAATGGTGGTTTAGAGTGGCTGTGCAGTTCAGTTTAATCTCGCTCTGTGCATGTTCTGACTCTTATGAGAGAATTTCACTCAGAAAAGTTTTGAAGCAACCTTCGCCTCCTCCTCCTGTGAAGCTGAATACCGAAAATCCTCACCAGGTGGTGATTGCCAACGGCTTCGTTTCCTTAAATTTGTCAAATCCCGAAGGCTACATCATTGGAATATATAAAGGAAATAGAAATGTACTTGAGGATAAAAATGGAAAAGAGGATAGAGGGTACTTCGATGTTGTTTGGAATAATGTAGGAAAAGGTGGCATGTTTGAGAGAATCCATGGGACAAAATATTCAGTCATTGTAGCAAATGATAATATAGTGGAGATTTCATTCTTAAGAGCATGGGAAGCTTCCATGAAAGGCTCAAGAGTCCCCATAAACATAGACCAAAGGTATATATTGCGAAGAGGCGATTCAGGATTTTATTCATACACAGTGTTTGATCGACCAAAAGGATTCCCTGCCGTGGAGATTTACCAAATTAGAACTGTTTTCAAACTCGACGAAGACAGGTTCCACTACATGGCCATATCCGATACTAGGCAAAGACACATGCCAACTGAGGCAGATAGAGCATCAGGTCAACGTTTAGCGTATCCTGAAGCTGTTCTCTTAACCCATCCATCTGATGAAGATTTTGTGGGAGAGGTGGATGACAAGTATCAATACTCGAGTGACAACAAAGATATCACTGTTCATGGTTGGATTACACATGATGATTTAGCGCCAGAGGGTTTCTGGGTGATAACTCCGAGTAATGAGTTCCGCCATGCTGGGCCCATGAAGCAAGACCTCACTTCTCATGTTGGCCCAACCACTCTTTCCATGTTTGTGAGCACTCATTATGCTGGCAAGGAAGTAGCCATGATATTTGGTGAAGGAGAGACTTATAAAAAGGTTTTTGGACCAATTTTTGTTTATCTTAACTCTATTCCAAACAAAGCTCAGTTTCGATCTCTATGGTCAGATGCTGTAGAACAGTTATCCAATGAAGTAAGAATATGGCCTTATGATTTCGTTGGATCAAAAGATTTCTTTCCGCCCAATCAACGGGGAACAGTGGTAGGACAACTACAAGTCCAAGATGGGGTAGGGAAAGTTCAATCTGCTAACAATGCTTACGTTGGTCTAGCTTTGCCTGGAGTGGCAGGATCATGGCAGCAAGAAAGCAAGGGTTATCAATTCTGGACTCAAACTGACAAAAATGGATACTTCTTAATTAAAAATATTGTACCTGGGGAATACAACTTGTATGCATGGGTTGCTGGTTTTATTGGAGATTACAAATATACAAATACAATTACCATCAAACCAGGGGACAAAATCGACTTGAATTCACTTGTATATAATCCTCCAAGAAATGGTCTTACTCTTTGGGAAATTGGGATCCCAGATCGCTCAGCTGCAGAATTCTATGTACCAGACCCTAACAAAAAGTTCGCTAACAGATTATTCCTCAATGACACCCAAGACAAGTTTAGGCAATACGGCTTGTGGGCGCGTTACACTGAGTTATATCCAAAATATGATCTCGTTTATACGGTTGGTGTTTCTGACTATCACAAGGATTGGTTTTATGCTCAATTTACCAGGAGCACATCAGAAATTAAGACATACCTTCCTACCACTTGGCAGATTCAATTTGAACTTAATAATACTATAATAAATGGAAACTACACGCTACAAATATCTCTGGCAGCTGCCAATGGTGCTAGATTGGAGGTTAGGTTCAATAACCCAAATGTTGAGCCTCCCCACTTCTCAAAAGGGCTAATAGGCGAGGACAATGCGATAGCAAGACATGGAATCCATGGGTTATGTAGGTTATATACTATAGTTGTAGGTAGTAAACAATTGGTAAAAGGAAAAAACATCATCTATTTGAAACAGTCAAAAGCCACAGGTCCTTTCGAAGGAGTTATGTATGACTATATCCGCTTAGAAAGTCCTTCAATTAAGAAAAATTGATTCAGCAAGAACTTCTAGTAGAGGAGAATAATTAAGTGTGACTATCCCCATTGGGATTCTACCATCTTGCAATTTGCATTACAAAAGTTCTGGCTGGCTTTTACCAAGAGGACAATAATTGATTAATAATTATCCCATTAGGATAATTATTTTTATGTC 2211 0.398 MRAVTQVRKQVSFQWWFRVAVQFSLISLCACSDSYERISLRKVLKQPSPPPPVKLNTENPHQVVIANGFVSLNLSNPEGYIIGIYKGNRNVLEDKNGKEDRGYFDVVWNNVGKGGMFERIHGTKYSVIVANDNIVEISFLRAWEASMKGSRVPINIDQRYILRRGDSGFYSYTVFDRPKGFPAVEIYQIRTVFKLDEDRFHYMAISDTRQRHMPTEADRASGQRLAYPEAVLLTHPSDEDFVGEVDDKYQYSSDNKDITVHGWITHDDLAPEGFWVITPSNEFRHAGPMKQDLTSHVGPTTLSMFVSTHYAGKEVAMIFGEGETYKKVFGPIFVYLNSIPNKAQFRSLWSDAVEQLSNEVRIWPYDFVGSKDFFPPNQRGTVVGQLQVQDGVGKVQSANNAYVGLALPGVAGSWQQESKGYQFWTQTDKNGYFLIKNIVPGEYNLYAWVAGFIGDYKYTNTITIKPGDKIDLNSLVYNPPRNGLTLWEIGIPDRSAAEFYVPDPNKKFANRLFLNDTQDKFRQYGLWARYTELYPKYDLVYTVGVSDYHKDWFYAQFTRSTSEIKTYLPTTWQIQFELNNTIINGNYTLQISLAAANGARLEVRFNNPNVEPPHFSKGLIGEDNAIARHGIHGLCRLYTIVVGSKQLVKGKNIIYLKQSKATGPFEGVMYDYIRLESPSIKKN 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01254 683 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Pste1g01254 683 CDD RGL4_C 487 676 - -
Pste1g01254 683 CDD RGL4_N 62 338 - -
Pste1g01254 683 Gene3D - 483 676 - -
Pste1g01254 683 Gene3D - 57 336 IPR014718 GO:0030246
Pste1g01254 683 SUPERFAMILY Galactose mutarotase-like 57 338 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pste1g01254 683 Pfam Polysaccharide lyase family 4, domain III 485 675 IPR029411 -
Pste1g01254 683 SUPERFAMILY Starch-binding domain-like 375 474 IPR013784 GO:0030246
Pste1g01254 683 Pfam Polysaccharide lyase family 4, domain II 399 471 IPR029413 -
Pste1g01254 683 CDD RGL4_M 378 475 IPR029413 -
Pste1g01254 683 SUPERFAMILY Galactose-binding domain-like 483 676 IPR008979 -
Pste1g01254 683 Gene3D - 375 474 - -
Pste1g01254 683 Pfam Rhamnogalacturonate lyase family 50 245 IPR010325 -
Pste1g01254 683 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 56 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01254 Pste-Chr1 4010215 4018390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01254 53 679 Polysaccharide Lyase AT1G09890 53.943 0.0 675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01254 1 4010215 4018390 Pste7g00226 7 2134801 2147647 PCT