Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01244 AAGAGTTTCAAAGGGGGTCAACAACCTAGAATTAAGGGGCTCTCCTCCTCCAGTCATGCTTAATACCGAAAATGCTCACAAGGTCATAATTGCCAACGGCATCGTTTCCCTGAATTTGTCAAATCCTGGGGGCTATATCATCGGAATATATACTACAGCTGGAACTAACAACATACTTGACGATACAAATAAAGAAAACGACAGAGGGTACTTCGATGTTGTTTGGAGTAAAACAGCAAAACCTGACACGTTTGAGAGAATCGAAGGGACAAATTTTTCAGTAATTGTAGCAAACGAGAGTGTAGTGGAGGTTTCATTTTTAAGAACATGGACATCTTCCATGAAAGGCTTAAGTGTCCCCATAAACATAGACCAAAGGTATATATTACGCAGAGGCGATTCTGGATTTTATTCGTATGTAGTATTCGACAGACCACCAGGATTACCTGCGGTGAAGGTTTCTCAAACTAGAAATGTTTACAAAATCGACAAAGCCAGATTTCACTATATGGCCATATCTGATACTAAGCAAAGGAACATGCCGTCTCTCGCAGACAGAGAAACAGGTCAACCCTTGTTGTATCCTGAAGCTGTTCTATTAACTCATCCATCTGACCCACAATTTAAGGGAGAGGTGGACGACAAATACCAATACTCGACTGAGAACAAAAATAACTCTGTTCACGGCTGGATTAGTGATGAGTTGACACCTGAAGGATTTTGGATGATAACGCCCAGTAATGAGTTTCGCAATGCTGGGCCCATTAAGCAAGATCTCACCTCTCATATGTTCACGAGCAATCACTATGCTGGCGAAGAGGTAATCATGACATTTGGTGAAGGAGAGACTTATACTAAGGTTTTTGGTCCAATTTTTGTGTACCTTAACTCTGCCCCAAGCAAAGCTCAGTTTCGGTCTTTGTGGTCAAATGCTGTTGAACAGTTATCGAATGAAGTCACAAAATGGCCTTATGATTTTGTTGGATCAAAATCTTTTCATCCACCCAATCAACGGGGAACAGTGGAAGGACAACTAAAAGTCCAAGATGGGTATAAACCAATGCTATATTTAGCAACAGTTTTATTCTTCGATGACATTAGATTAACTTACATTAGAGTTCCTGTCTTTCCCTTGCTTATTACCAGGGGAGGAATAGCTCAGCCTGCTATTAATGCTTACATTGGACTAGCTTTTCCTGGAGATGCAGGATCATGGCAGAAAGAGAGCAAGGGTTATCAATTTTGGACTCAAACCGACACAAATGGAAATTTCTTAATTAAAAATATTATACCTGGAGACTACAACTTGTATGCATGGATTGTTGGCTTTATTGGAGATTATAAGTACACATCTACTATTTCCATCAAACCAGGGGGCAGCATCAAGTTGGACACACTTGTATATAGTCCTCCAAGAAATGGTCCTACTCTTTGGGAAATAGGAATCCCAGATCGCTTAGCAGCAGAATTCTATGTACCAGACCCCGACCCTAGGTTCATAAACAAATTATACTCTAATGATAGCCAAAACAAGTTTCGGCAATACGGCTTGTGGGATCGTTACACTGAGCTATATCCAAACCATGATCTCATTTATACGGTTGAAGTTGCTGACTATCACAAGGATTGGTTTTTTGCTCAAGTTGCTAGGAGAACAGCAAATACGACATACATTCCAACCACATGGCAGATTGAATTCCAACTTCAAAATATCATAATGGGAGGAAACTACACATTGCAAGTGGCCGTAGCATCTGCCGCTCATTCTACATTGGAGGTTAGATTCAATGATCCGGATATTCGGCCTCCTCACTTCTCAACTAAGAAAATAGGAGATGACAATGCCATAGCAAGGCACGGCATCCATGGATTGTATAGGCTATATACCATAGTTGTAGGTAGTAATGATTTAGTAAAAGGGAAAAACACAATCTATTTAACACAGTCAGAAGTGATAGGTCCTTTAAAAGGAGTTATGTATGACTATATTCGCTTAGAAAGTCCTCCAATT 2011 0.4023 MLNTENAHKVIIANGIVSLNLSNPGGYIIGIYTTAGTNNILDDTNKENDRGYFDVVWSKTAKPDTFERIEGTNFSVIVANESVVEVSFLRTWTSSMKGLSVPINIDQRYILRRGDSGFYSYVVFDRPPGLPAVKVSQTRNVYKIDKARFHYMAISDTKQRNMPSLADRETGQPLLYPEAVLLTHPSDPQFKGEVDDKYQYSTENKNNSVHGWISDELTPEGFWMITPSNEFRNAGPIKQDLTSHMFTSNHYAGEEVIMTFGEGETYTKVFGPIFVYLNSAPSKAQFRSLWSNAVEQLSNEVTKWPYDFVGSKSFHPPNQRGTVEGQLKVQDGYKPMLYLATVLFFDDIRLTYIRVPVFPLLITRGGIAQPAINAYIGLAFPGDAGSWQKESKGYQFWTQTDTNGNFLIKNIIPGDYNLYAWIVGFIGDYKYTSTISIKPGGSIKLDTLVYSPPRNGPTLWEIGIPDRLAAEFYVPDPDPRFINKLYSNDSQNKFRQYGLWDRYTELYPNHDLIYTVEVADYHKDWFFAQVARRTANTTYIPTTWQIEFQLQNIIMGGNYTLQVAVASAAHSTLEVRFNDPDIRPPHFSTKKIGDDNAIARHGIHGLYRLYTIVVGSNDLVKGKNTIYLTQSEVIGPLKGVMYDYIRLESPPI 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01244 652 Pfam Rhamnogalacturonate lyase family 7 194 IPR010325 -
Pste1g01244 652 Pfam Polysaccharide lyase family 4, domain III 458 647 IPR029411 -
Pste1g01244 652 SUPERFAMILY Galactose-binding domain-like 455 648 IPR008979 -
Pste1g01244 652 CDD RGL4_N 1 285 - -
Pste1g01244 652 CDD RGL4_C 460 648 - -
Pste1g01244 652 Gene3D - 365 447 - -
Pste1g01244 652 Pfam Polysaccharide lyase family 4, domain II 373 444 IPR029413 -
Pste1g01244 652 Gene3D - 456 648 - -
Pste1g01244 652 SUPERFAMILY Starch-binding domain-like 392 447 IPR013784 GO:0030246
Pste1g01244 652 Gene3D - 68 295 IPR014718 GO:0030246
Pste1g01244 652 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 651 - -
Pste1g01244 652 CDD RGL4_M 319 448 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01244 Pste-Chr1 3963300 3968765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01244 5 650 Polysaccharide Lyase AT1G09890 49.238 0.0 632