Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01242 CTTTCTCTTGTTCATAGTTATTCCTGCTTCACTTGTATGTTTTAGTTTCTAGCATTGATCCCTGCTAAATATTTACTGCATTTCTCTACTCCTTATGCTTGACGTTTTGTCATTTAAAATGGAAATTAATTTTAAGCACCAACTTAGCCTTCTCTGTGTCATACTGCTCTTACCTTCCCTGTGTACCTCTCAGGACTCTTTTACTTGCTCCAGAGCAACCTATTATGGTAGCCCAGATTGTTATGGAAATCCAAGGGGAGCTTGTGGGTTTGGCGAATATGGAAAAACGGTAAACGATGGCAGCGTCGCAGGCGTGTCTTGGCTTTGGAGGAATGGATCTGGCTGTGGAGGATGCTATCAGGTTAGGTGCAAAATAGCAGAATTGTGCGATGAGAACGGAGCATACGTGGTGGTGACAGATTATGGTGAGGGAGACAGAACAGACTTTATAATGAGTCCACGTGGCTACTCAAGATTGGGAAGAAACGCAGATGCATCTGCACAGCTATTCAAATACGGTGTGGTGGATGTAGAATACAGAAGGGTCCCCTGTAGATACGGTGGCTATAATCTCTTGGTTAAGGTCCATGAACACAGCAGAAGCCCTCACTACTTAGCCATTCTCATTCTCTATCTTGCTGGAACTTACGACGTTACTGCTGTTGAGTTGTGGCAGGAAGAGTGCCAAGAGTGGAGGCGAATGCGCAGGGCATTTGGGACAGTGTTTGACGCAGAGAACCCTCCAAGGGGTGACATCAAATTGAGGTTTCAATTGAGTGGTAATGCACAGCAGTATTGGGTGCAGTCCAAGAATGTTATCTCTGCTGATTGGGAGGCTGGAGCTGTTTATGACTCACAAATTCAACTTGGTTAAAATTAAAAACTACTCTCAGTGTTCTATTATTGTTTATAGTTTGTGTTATTCTAAGAATGTTCCTTTGTATAGGGGACTAATGTGGGGGTTCCGTATGAATCATCACAGAATATGAATAAATAAAACTCCTGCTCTGCTATTGTCACGAGAA 1025 0.4312 MLDVLSFKMEINFKHQLSLLCVILLLPSLCTSQDSFTCSRATYYGSPDCYGNPRGACGFGEYGKTVNDGSVAGVSWLWRNGSGCGGCYQVRCKIAELCDENGAYVVVTDYGEGDRTDFIMSPRGYSRLGRNADASAQLFKYGVVDVEYRRVPCRYGGYNLLVKVHEHSRSPHYLAILILYLAGTYDVTAVELWQEECQEWRRMRRAFGTVFDAENPPRGDIKLRFQLSGNAQQYWVQSKNVISADWEAGAVYDSQIQLG 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01242 259 Gene3D - 154 255 IPR036749 -
Pste1g01242 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Pste1g01242 259 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Pste1g01242 259 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Pste1g01242 259 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Pste1g01242 259 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Pste1g01242 259 PANTHER EXPANSIN-B3 23 257 - -
Pste1g01242 259 Pfam Lytic transglycolase 71 148 IPR009009 -
Pste1g01242 259 SUPERFAMILY Barwin-like endoglucanases 21 157 IPR036908 -
Pste1g01242 259 CDD DPBB_EXLB_N 39 153 - -
Pste1g01242 259 Pfam Expansin C-terminal domain 162 242 IPR007117 -
Pste1g01242 259 Gene3D - 27 153 IPR036908 -
Pste1g01242 259 SUPERFAMILY PHL pollen allergen 160 254 IPR036749 -
Pste1g01242 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 158 IPR007112 -
Pste1g01242 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 254 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01242 Pste-Chr1 3953611 3955660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01242 11 258 Expansin Gene Family AT4G17030 60.956 9.02e-112 320
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01242 1 3953611 3955660 Pste7g00633 7 5862344 5863939 PCT