Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01239 ATGGCAATGCCAGTCAATAATTGTCATTCTGAAAAAGAAAGATATGAAAAGTCATTGGTGGAAAATGGGGAGTGCACTTTCCTCGCTAGACCCATGTATAAACGGCGGAAATTTTCTGCTGTTCGAGATTTCCCGGATGAATGTGGACCGTTTGCTTCAAGGATTGATCCAGTGTTAAACATAAATATTGCGGGTTGTTGTGCTGGTAATGGTACAATAGTTGAGGATAAGAATGCTGAACATTTAGAGGGTGACACACTTAAAATTTCCAATTGTAAAAATGATGATAGAGATTATGAGGTAAAAGATTCATTTCTTACCGAGGGCCTTGGTCAAACAATTGATAGTCCTTTGAATAAAGGAAGTCCTATTGCCTTATCTCATCAGGTGAATGGGTCTATTGCAAAAGATGAACCTTTGAAAGTGTCTATTGACCAAAATGAAAATTTTATAGGCTCTTCTCATAATGTGGATGGACCTATTGTGGAAGATGAAGTTGCAAAAGTGATGCTTGATCAAACAACTGATTGCAGTTTGAATCAAGAAAACCCTGTGGTCTCATCACATCAAACAGATGGTTATATTGTGGAAACAACAGATTGTGCTTTAAATAAGGAAAGCCCTATGGTCTCATCACTTGTGGACAGGCTTGCTTTAGAAGATGAAGCTGCAAAAGAGCCATTAGTAGACACAAAAACTTTGCAAATAGAGTATACAAGAACCACGAACAACTTATTGGAATCATCTCCTGTGGGTGAGGTGGTTATCTTAGGTGGTTCAAAATCCTTATCATCCAATGTCAATATATTCGATTCTAGTGCTTGCATAGTGGAGCCTGTAACTAGAAGGTATCTTCCTCGAAGGAAAGTTTCAGCTGTTAGAAACTTTCCTCTTTTATGTGGGCGCAATGCTAATCACCTCTGTAAGGACAAGGATGTCCACAATAGTCAAGATGAATATGGTCGCAAGAGAAAGTTTGTGGACATTGTTCAAACAGATTTTGACAATAGTGCTGAAGAGAAAGTGAAGAAGCTGCATGTATCTGAACCATTGTCAGAGATGAAAATTCCACTAGAAGACAATAGTGAAAAGTATGCTACACTCCTTGAAAAAAGTATTCATAAGCAGGTTAAAGTAAATTCCAAGGCATTGGTAAAAGTGAAAAATAGGGATGAGACAAAGCCTTTGTATATATCTCATTCAAAGCATAAGTTGAAAGGAAATTTGGATGGATTGCGGAGGGAAGTAGTACAAGGTTTGATGGCTAACTCAGAATGTCCTTGGAGTTCTGGAAAGGGTTCCTCCAAATTTAAGTTGTTTAATGGTAAAAGTAATGATAAGCAAAGGAAAGTGGATTCTTCTGCATTGGTTTGCTTGTCCCAAACAACTATCAAGACTAAAGGAGCATTGAATCATTCTAGGCAAAAGCATTCGAAAAAGAAAAAGGCAAATGCTGCTTCTGAAGGTATGGGTGAGTTAGTGATTTGGGAAAAGGAGGATTGTACCGATGCTTGTGAAAATAATGAAGACCTTCAAATTGTTTTGAAATCACACGAGTTCAATGTAAATATTACTCCATCTTCTCATTCTAATTTCACCGGTGATGCTAATGATTCAAATGTGACCCGAAAAAAAGTGAGGGAAACATTACGGTTGTTTCAAGTTATTTGTAGAAAGCTTTTACATGAAATAGAATCAAATGTAAATGAGGGAGCAAAGAGTAAAAGGGTTGATACACTTGCCGCAAAGATCCTTAAGGAGAATGGGAAATATGTTAACTCAGGCAAGCAGATACTGGGCATTGTCCCCGGGATTGAAGTTGGTGATGAATTTCAATATAGGGTGGAGCTTATTATAGTCGGTCTTCATCGTCAGACTCAGAGTGGCATAGATTATGTGAAGGCAAATGGTATGATCCTTGCAACTAGTATTGTTGCATCTGGAGCCTATGCTGATGATTTGGATAATTCAGATATCTTGATATATACAGGACAAGGTGGGAATGTGATGAGCACGGATAAAGAACCTGAAGATCAGAAGCTTGAGCGTGGCAATCTTGCTTTGAAGAACAGTATTGAGGAAGGGAATCCTGTTAGGGTGATACGTGGCTTTGAATCAATAGATGGAAAGTGCAAGACATATGTTTACGATGGATTGTATTTAGTTGAGTCGTATTGGCAGGATGTGGGACCACATGGAAAGCTGATTTATAGGTTTCGTCTTCGAAGAAAAACTGGTCAAGCCGAGCTTGCTTTGAAGGAAGTGAAGAAATCTAAGAAGTTCAAAACAAGAGAAGGTCTATGCATTGATGATATTTCTCATGGAAAAGAACGAATTCCCATATGTGCGGTGAACACCATAGATGACGAAAAACCCCCTCCATTTAATTACATAACCAGCATGATATACCCCAATTGTCTTCTTGTTCCTTCTAAAGGATGTGATTGTACTAATGGATGCTCTGACTTGAAGAAATGTTCGTGTGTAGTAAAAAATGGGGGTGAGATCCCATTCAATCACAATGAGGCTATTGTAGAAGCAAAGCCTCTAGTCTATGAGTGTGGACCTACTTGTAAGTGTCCTTCAACATGCCATAATAGAGTCAGTCAACTTGGTATAAAGTTTCAGCTTGAAATTTTTAAAACCAATACAAGGGGATGGGGTGTGCGATCTCTGAATTCAATCCCTTCCGGAAGTTTTATCTGTGAATATATAGGTGAGCTTCTTGAAGAGAAGGAAGCTGAACAAAGAACTGGTAATGATGAATATCTTTTTGACATTGGAAATAACTACAGCAACAGTACTCTTTGGGATGGACTATCAACCCTCATGCCTGATGCACAGAGAACTTCCTGTGAAGTTGTGAAGGACGGTGGGTTCACCATTGATGCCGCACAGTTTGGTAATGTGGGGAGATTCATTAACCATAGCTGCTCCCCAAATCTTTATGCTCAGAATGTCCTTTATGATCATCATGACACCAGGATGCCTCACATCATGTTTTTTGCTGCTGAGAACATTCCTCCTTTGCAAGAGCTGACATACGATTATAACTATGAAATTGATCAAGTCTGGGATTCTGATGGTAATATAAAAAAGAAGTATTGTCATTGTGGTTCAATGGAATGTACTGGTAGGATGTATTGA 3147 0.3867 MAMPVNNCHSEKERYEKSLVENGECTFLARPMYKRRKFSAVRDFPDECGPFASRIDPVLNINIAGCCAGNGTIVEDKNAEHLEGDTLKISNCKNDDRDYEVKDSFLTEGLGQTIDSPLNKGSPIALSHQVNGSIAKDEPLKVSIDQNENFIGSSHNVDGPIVEDEVAKVMLDQTTDCSLNQENPVVSSHQTDGYIVETTDCALNKESPMVSSLVDRLALEDEAAKEPLVDTKTLQIEYTRTTNNLLESSPVGEVVILGGSKSLSSNVNIFDSSACIVEPVTRRYLPRRKVSAVRNFPLLCGRNANHLCKDKDVHNSQDEYGRKRKFVDIVQTDFDNSAEEKVKKLHVSEPLSEMKIPLEDNSEKYATLLEKSIHKQVKVNSKALVKVKNRDETKPLYISHSKHKLKGNLDGLRREVVQGLMANSECPWSSGKGSSKFKLFNGKSNDKQRKVDSSALVCLSQTTIKTKGALNHSRQKHSKKKKANAASEGMGELVIWEKEDCTDACENNEDLQIVLKSHEFNVNITPSSHSNFTGDANDSNVTRKKVRETLRLFQVICRKLLHEIESNVNEGAKSKRVDTLAAKILKENGKYVNSGKQILGIVPGIEVGDEFQYRVELIIVGLHRQTQSGIDYVKANGMILATSIVASGAYADDLDNSDILIYTGQGGNVMSTDKEPEDQKLERGNLALKNSIEEGNPVRVIRGFESIDGKCKTYVYDGLYLVESYWQDVGPHGKLIYRFRLRRKTGQAELALKEVKKSKKFKTREGLCIDDISHGKERIPICAVNTIDDEKPPPFNYITSMIYPNCLLVPSKGCDCTNGCSDLKKCSCVVKNGGEIPFNHNEAIVEAKPLVYECGPTCKCPSTCHNRVSQLGIKFQLEIFKTNTRGWGVRSLNSIPSGSFICEYIGELLEEKEAEQRTGNDEYLFDIGNNYSNSTLWDGLSTLMPDAQRTSCEVVKDGGFTIDAAQFGNVGRFINHSCSPNLYAQNVLYDHHDTRMPHIMFFAAENIPPLQELTYDYNYEIDQVWDSDGNIKKKYCHCGSMECTGRMY 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01239 1048 ProSiteProfiles Post-SET domain profile. 1032 1048 IPR003616 -
Pste1g01239 1048 SUPERFAMILY SET domain 759 1024 IPR046341 -
Pste1g01239 1048 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 405 1041 - -
Pste1g01239 1048 SMART preset_2 769 859 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pste1g01239 1048 ProSiteProfiles Pre-SET domain profile. 812 872 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pste1g01239 1048 SUPERFAMILY PUA domain-like 582 756 IPR015947 -
Pste1g01239 1048 ProSiteProfiles YDG domain profile. 600 743 IPR003105 -
Pste1g01239 1048 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 447 1048 IPR025794 GO:0016571
Pste1g01239 1048 Gene3D - 582 763 IPR036987 -
Pste1g01239 1048 Pfam SET domain 886 1018 IPR001214 GO:0005515
Pste1g01239 1048 ProSiteProfiles SET domain profile. 875 1018 IPR001214 GO:0005515
Pste1g01239 1048 Pfam Pre-SET motif 772 867 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pste1g01239 1048 SMART G9a_1 595 747 IPR003105 -
Pste1g01239 1048 SMART set_7 875 1024 IPR001214 GO:0005515
Pste1g01239 1048 Gene3D SET domain 764 1048 IPR046341 -
Pste1g01239 1048 Pfam SAD/SRA domain 599 747 IPR003105 -
Pste1g01239 1048 CDD SET_AtSUVH-like 793 1019 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01239 Pste-Chr1 3947758 3950904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01239 536 1045 Su(var)3-9 homologs AT5G04940 40.643 2.94e-118 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pste1g01239 SAD_SRA 5.8e-50 CL0178