Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01233 CCCTCTCTCCCCCTCTTTCTCTCTCAACATTTTCCCTTCTTTTCTTTTCCTCTTTTCACAACCCTTTGTGAGATTCCTCCAATGGTCTTCTCTCTTCCATTGGATTGTACAATTTTCCGGCTAAAATAGACACGTCAATCCCATCATTTCTAGCTGCTGTGGGTTGTCTATGTGAAAATTTTTAAGCACTCTAAAAGACAAGACTTTTCTGGGTTTATTTATTGGTTTCTGCTTTATTTTTATTTTTCTAGCAAACAATCATTCTGGGTTTGCTCATAAAAGCCTTTCCAGACAGCTATTGTATTTTTTTATTTTTCATAAAAATTCCATTTTGCTTAGCTTTTTTTGTCCAAAGAATATTTCTTTTTTCGTTTTTTTCTGCAAATTTTCTTTGTATTCATCTTTTATTAATCTGTAATTTGCGGAAAAGATTGAGTCATGGGCAAACATGGACCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGCAATGGCCCACCTGAGAAGCCAGTACTATGCAATGCATGTGGGTCTCGATGGAGGACTAAGGGAACTCTTGCAAATTATACCCCTTTACATGCTCGAGCAGAAACTGATGATTATGAGGATCAGAGGGTTTCTAGGGTAAAGAGCATAACGATAGATAAAAAGAAAGATATGACATTTCTAAAACGAAAGCAGAATCATGACAACGTAGTAGCGGGAGGGTTTGCACCTGATTACAACCAGGGATACCAAAAGGTTGTAGATGAAGATATAAGCAACCGATCGAGTTCAGGATCAGCTATCTCTAACTCTGAGAGCTGTGCACAATATGGTCATGGTGCCATGGATGCTAGTGATATGACAGGTGCTGCTCAGTCAGTGGTTTGGGATGCCATGGTGCCTTCAAAAAAGAGGACATGTGTTAGTCGTCCAAAGCCTTCTTCCGTTGAGAAGCTGACAAGAGATTTATGTACTATTCTTCATGAACAACAGTCTCATTTTTTGGCATCTTCTGAACAAGATCTTCTTTTTGAAAGTAAAGCGCCAATGATCTCTGTTGAGATAGGACATGGAAGTGTTCTCATCAGGCATCCTAGCTATATAGCTCCTGAAGAAGAGTCCGAGGCTAGCTCTTTTTCAGTTGATAATAAACAATGCCCAATGAGTGAGGCATATTCTTATTCTGGTTCCATTCTAATGCATAATGATTCTAGTTGCTTGAAGGCATCATCTCTGGAAGTTGAAAAGATCAGGAACTCTACTGCCCAAGGAGTGCAGCACGAGCAACTTAAAAGTGACAATTCTCAACTTGATAGAGAACAAATCCTTGGCAATCATGAATCGCCATTGTGCTCAATAGATTTAAATGATGTAGTAAACTATGAAGAGTTTTTGAGAATCTTGACAAATGAAGAGCAACAACAATTACTGAAGTTACTTCCTGCAGTTGATGCTTCTAAACTTCCTGATAGCCTTAAAGTCATGTTCAATAGTTCTCAATTTAAGGAGAACTTAGCTTATTTTCAACAGCTTCTTGTGGAAGGAGTTTTTGATATCTCTCTGTTGGGGGCAAAACCTGAAGACTGCAAGACTTTGAAAAGACTTGCATTATCCAATCTGTCAAAGTCAAAATGGCTAGAACAATATAATTTTCTCAAGAAATGTAAAAGCAAAGCTGGAAAATCGGATACTTTGGGATCTGCTGGTGCAGCATCAACTAATGTTGCAGATATCAAGAGAATGCGTGACAGCAGAAATCAAAACTTTCCAGACTTGAAGACAATAATGAGGTGCCCCAAAAGAATGATCACAATGGCCGGCTGTGAGAGCAAACAAGCTGTAGAAGATGGTAGTTGCTATGGTCCAAAAAGCCTATTTATTTTGCCTCCTGATGCCAGTTCACTCACCATTGATTCTTTAAACTTTGTTGAAGAGAGTAGTGATCAGGATGTACTGCTAGAGGTGCCGTCTAACACTTCATTTCCACAGGCAGAGCTCTTGTGCCCAACTTTAAGCCTTGGTGCTAAAGCCAGCACTAGTAGTAGCTCAGTCTATTCACATCTTGTTCATCAT 2064 0.3939 MGKHGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETDDYEDQRVSRVKSITIDKKKDMTFLKRKQNHDNVVAGGFAPDYNQGYQKVVDEDISNRSSSGSAISNSESCAQYGHGAMDASDMTGAAQSVVWDAMVPSKKRTCVSRPKPSSVEKLTRDLCTILHEQQSHFLASSEQDLLFESKAPMISVEIGHGSVLIRHPSYIAPEEESEASSFSVDNKQCPMSEAYSYSGSILMHNDSSCLKASSLEVEKIRNSTAQGVQHEQLKSDNSQLDREQILGNHESPLCSIDLNDVVNYEEFLRILTNEEQQQLLKLLPAVDASKLPDSLKVMFNSSQFKENLAYFQQLLVEGVFDISLLGAKPEDCKTLKRLALSNLSKSKWLEQYNFLKKCKSKAGKSDTLGSAGAASTNVADIKRMRDSRNQNFPDLKTIMRCPKRMITMAGCESKQAVEDGSCYGPKSLFILPPDASSLTIDSLNFVEESSDQDVLLEVPSNTSFPQAELLCPTLSLGAKASTSSSSVYSHLVHH 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01233 542 Pfam Asx homology domain 287 385 IPR028020 -
Pste1g01233 542 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Pste1g01233 542 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Pste1g01233 542 Gene3D - 291 394 IPR038108 -
Pste1g01233 542 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Pste1g01233 542 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Pste1g01233 542 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Pste1g01233 542 Gene3D - 4 85 IPR013088 GO:0006355|GO:0008270
Pste1g01233 542 PANTHER OSJNBB0038F03.10 PROTEIN 1 540 IPR044589 -
Pste1g01233 542 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Pste1g01233 542 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 297 408 IPR044867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01233 Pste-Chr1 3936216 3942657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01233 1 518 C2C2-Gata Transcription Factor Family AT4G17570 49.242 6.06e-151 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pste1g01233 ASXH 9.2e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01233 1 3936216 3942657 Pste7g00602 7 5630856 5635416 PCT