Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01223 ATGGGAAGGGGAAAGATTGTGATTGAAAGGATTGACAATTCCACCAGCCGTCAAGTGACTTTCTCAAAGAGGAGAAAGGGATTGATCAAGAAAGCCGAAGAGCTAGCCATCCTTTGTGATGCCCAAGTTGGTCTTATGATATTCTCCAGCTCGGGAAAGCTTTATGAATATGCAAGCTCCAGTCTTGAAGATTATAATGCCACAAACATGCATGGTTATAAGTTCAAGGAGATCACGTTCAAGGAGATTCATCTCCTGGCACTTGACAGTTCTCGATAG 279 0.4301 MGRGKIVIERIDNSTSRQVTFSKRRKGLIKKAEELAILCDAQVGLMIFSSSGKLYEYASSSLEDYNATNMHGYKFKEITFKEIHLLALDSSR 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01223 92 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pste1g01223 92 CDD MADS_MEF2_like 2 64 IPR033896 GO:0000977|GO:0045944
Pste1g01223 92 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 66 - -
Pste1g01223 92 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Pste1g01223 92 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pste1g01223 92 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pste1g01223 92 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste1g01223 92 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pste1g01223 92 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pste1g01223 92 SUPERFAMILY SRF-like 2 67 IPR036879 GO:0003677|GO:0046983
Pste1g01223 92 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01223 Pste-Chr1 3909724 3910333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01223 1 62 MADS-box Gene Family AT4G37940 85.484 5.80e-34 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pste1g01223 SRF-TF 6.7e-25 No_clan