Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01221 ATGTTGAATGTTGATGTGATTGGAAACAAGAAAAGGAAGAGGTGTGGGAGGGTTTTCAGGTTCAAGAATTTTGGTGAACCCGGATACCCTGTTGTGTTTACTGGGCCATTTCGTGAGAATGTGAATGCATTACTTGAATATGCAAATTTGGAGAGTCATTTAAGCATGGAAATGCCAATGTGGTCTTTTCAACTTGAAGTTGATCACCACCCACCTTTGCATATCTTCTTGTTTGTGATTGAAGAACCCATAGAGGCAGCACTCAATCGTCACTGCAACCATTGTCAATATGTTGGCTGGGGCAGACATTTCATTTGCAATAAGAAGTATCATTTTGTGTTACCCTCAAAGGAGGCAATGGGTTCCTGCACAAGCTGTGAAGGGTGTTGTGATGCAATTGCTACAATTAATAATGGTAAGTCGAAATTAATCGAATTACAGGGTCATATGATGCATGGTGTTTTTCATTCTAATGGATTCGGGCATTTGCTATGTGTCAATGGATTGGAAATGGGTTCAAATTTGGCTGGGAACCAAATCATGGAGTTTTGGAATCGTTTATGCAACGGATTGCAAGCAAGGAAGGTGAGTTTGAATGACATTTCACAAAAGAGGGGAATGGAGTTGAGACTTGTAAATGGAATAGCATACAATGAGTCATGGTTCAGTCGTTGGGGTTACAAATTTGGTCGAGGATGCTTTGGTGTAACTCAATCCATGTATTGTAAGGCCATACAAGCAATAAGAAGCATGCCACTATACTTAATCATACACCACATTGGCAATTCTAACCATGGCATTTCACTTATTTTCTCAAGGTACCAAACACTTTCAGATCAATCACTAGTCACCCTTGGTGATCTATTTTATTACATGTTAGACCTTAAATCACGCCTTCCTCGTGAAACTTGCACTAGTTCCTATAACACAAATGCCTTGATTGAGACAAATTGTCGTTGGTCTCCTAAAAGGATTGAGATGGCAACAAGGGTTATTGTTGAGGCCTTGAAAAAGACAGAGTTTAGATGGGTTTCAAGGCAAGAAGTTAGAGATGCTGCTCGTGCATACATTGGTGACACTGGTTTGCTAGATTTTGTGTTGAAGTCACTAGGAAATCACATTGTAGGAAACTATTTGGTTCGTCGAAGCTTAAACCCTGTTACCAAAGTTTTGGAATATTGCTTAGAAGACATTTCTAATGTGTATCCATATAATGAAAGTTTGACTATGAGTATGAAAGTGAAGGACAAGTACAAGATCACAAGAGCTCAACTAATCAAAGATATGCTTTATTTGTACAAGTGTATTCTCATAGACCCTAAACCAATTATGGGATCAGAATTTCTCTCAGCTATACCATTAGCAACTAGGATAATTCTTGACACAAAGTATTTTATAAAAGATTACTTTGGAGATTATCCTAACCAAGTTGAATTAGGTTCAGATGATAAACTCAATCTTTATTGTACAATTTTGTTGAGGAATAATGTTGGTAGTGATGAGTATTTAAACAAGGTCATTATGCCACCCTATGAATTAATTACATTAACTAGAAGTGCTACTATCAATGACTTGAAGCTAGAGGTTGAAAGGAATTTTAGAGAAATTTATTGGGGTTTAAGGAGTTTTTTGGTGGAGTCAATTTGCAATTTTGGTTCGAATAATGGGACTGAAATGGTTTTTGGGCTGATTGAAATGGGTGAAAAACTTGTACTTGAGGGTTGTTATGGTGACATGCGGATAAACATGATTGAGAAAATGTGTGAAAGTGATCCAAAAATTGGTATAGTGAATTGCAATTGTGGAACTATAGAAGATGATGGCGAGAGGATGGTCTCATGTGATATTTGTGAAACTTGGCAGCATACTAGGTGTGTTAGAATTCCAAATGATGAAGAGATTCCTCATATTTTTCTATGCAAAAGATGTGAGCAAGAAATTGTTCTGCTTCCTTCGTTACCATAG 1965 0.374 MLNVDVIGNKKRKRCGRVFRFKNFGEPGYPVVFTGPFRENVNALLEYANLESHLSMEMPMWSFQLEVDHHPPLHIFLFVIEEPIEAALNRHCNHCQYVGWGRHFICNKKYHFVLPSKEAMGSCTSCEGCCDAIATINNGKSKLIELQGHMMHGVFHSNGFGHLLCVNGLEMGSNLAGNQIMEFWNRLCNGLQARKVSLNDISQKRGMELRLVNGIAYNESWFSRWGYKFGRGCFGVTQSMYCKAIQAIRSMPLYLIIHHIGNSNHGISLIFSRYQTLSDQSLVTLGDLFYYMLDLKSRLPRETCTSSYNTNALIETNCRWSPKRIEMATRVIVEALKKTEFRWVSRQEVRDAARAYIGDTGLLDFVLKSLGNHIVGNYLVRRSLNPVTKVLEYCLEDISNVYPYNESLTMSMKVKDKYKITRAQLIKDMLYLYKCILIDPKPIMGSEFLSAIPLATRIILDTKYFIKDYFGDYPNQVELGSDDKLNLYCTILLRNNVGSDEYLNKVIMPPYELITLTRSATINDLKLEVERNFREIYWGLRSFLVESICNFGSNNGTEMVFGLIEMGEKLVLEGCYGDMRINMIEKMCESDPKIGIVNCNCGTIEDDGERMVSCDICETWQHTRCVRIPNDEEIPHIFLCKRCEQEIVLLPSLP 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01221 654 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 594 650 IPR013083 -
Pste1g01221 654 SMART PHD_3 598 644 IPR001965 -
Pste1g01221 654 CDD PHD_MMD1_like 599 643 - -
Pste1g01221 654 ProSitePatterns Zinc finger PHD-type signature. 599 643 IPR019786 -
Pste1g01221 654 SUPERFAMILY FYVE/PHD zinc finger 595 646 IPR011011 -
Pste1g01221 654 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 648 - -
Pste1g01221 654 Pfam PHD-finger 599 645 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01221 Pste-Chr1 3897883 3903800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01221 10 654 PHD Transcription Factor Family AT5G22260 51.201 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pste1g01221 PHD 2.3e-08 CL0390