Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01202 ATGGACCTATCCAACAACACCATAGACACAAATTCTCAAACAGCTCCACAACCCACCAACGGGTCCTTCAAGCGCCACCACCCCACCAACGTTCCACTGCCCTCACAGCCTCCGTCCACGGTGTTTTCCTACAAAGAGTGTCTTAAAAACCATGCAGCCAGCATAGGTGGCCACGCGCTTGATGGGTGCGGTGAATTCATGCCCTCTTCTTCCTCCAACCCCACCGAACCACGTTCGCTAACGTGCGCCGCGTGTGGATGCCACCGTAACTTCCACCGCCGCGACACACATGAAAATCATCATCACTCCAACCCCAGGCCCAACTTCATAAGTTTCTACCACTCCCCACCGCCGCTATACCGCGGGCTGGGCCCTTGCACCAGCCCAAGCCCAGGCCCGAGCCAGAGCCTGAGCCTAAGCCCGATGTCAAGTCCCAGCCCACCACCGCTCTCTTCTCATTTCCCACCCTCCTCTCACCACTTCCGAGGCCCGAGACCGGCCCATGGGCTCTTGGGCCTGGGAAATGAAAGTCATCTCATGAACTTTAATTTTAACTCTTACTCCAAAACAGAGAGCCCAAGTGGGAAGAAGAGGTACAGAACCAAGTTCAGCCATGAACAGAAAGAAAAGATGCACAATTTCTCAGAGAAATTGGGTTGGAGAATGCAGAAAGGGGATGAACAAATGGTGCAAGAGTTCTGCAATGAGATTGGCGTTTCAAGAGGAGTCTTCAAGGTTTGGATGCACAACAACAAGAACACTTGCAGGAAGAGATCGTTGGAACCAGGTGAAAAGATCAATGGCACTGGTAATGATAGCACTACTAATAATAATAATCATTACGACACAACTAGCACCAACGATCACAACGCTCACTGA 879 0.5154 MDLSNNTIDTNSQTAPQPTNGSFKRHHPTNVPLPSQPPSTVFSYKECLKNHAASIGGHALDGCGEFMPSSSSNPTEPRSLTCAACGCHRNFHRRDTHENHHHSNPRPNFISFYHSPPPLYRGLGPCTSPSPGPSQSLSLSPMSSPSPPPLSSHFPPSSHHFRGPRPAHGLLGLGNESHLMNFNFNSYSKTESPSGKKRYRTKFSHEQKEKMHNFSEKLGWRMQKGDEQMVQEFCNEIGVSRGVFKVWMHNNKNTCRKRSLEPGEKINGTGNDSTTNNNNHYDTTSTNDHNAH 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01202 292 MobiDBLite consensus disorder prediction 1 37 - -
Pste1g01202 292 FunFam Zinc-finger homeodomain protein 2 183 257 - -
Pste1g01202 292 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 44 95 IPR006456 -
Pste1g01202 292 MobiDBLite consensus disorder prediction 266 292 - -
Pste1g01202 292 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 19 254 - -
Pste1g01202 292 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 44 95 IPR006456 -
Pste1g01202 292 Gene3D - 183 257 - -
Pste1g01202 292 MobiDBLite consensus disorder prediction 122 170 - -
Pste1g01202 292 MobiDBLite consensus disorder prediction 258 292 - -
Pste1g01202 292 NCBIfam homeobox domain, ZF-HD class 196 253 IPR006455 -
Pste1g01202 292 Pfam ZF-HD protein dimerisation region 43 96 IPR006456 -
Pste1g01202 292 MobiDBLite consensus disorder prediction 1 26 - -
Pste1g01202 292 MobiDBLite consensus disorder prediction 193 210 - -
Pste1g01202 292 SUPERFAMILY Homeodomain-like 188 257 IPR009057 -
Pste1g01202 292 MobiDBLite consensus disorder prediction 188 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01202 Pste-Chr1 3827503 3828381 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01202 42 267 ZF-HD Transcription Factor Family AT1G69600 42.672 4.81e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pste1g01202 ZF-HD_dimer 2.3e-28 No_clan