Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01174 AGAAAAACGCACAGCAGCATGTGACGCTTTGTTTTTGGGCTTATGGCGATGCCCAAAACCCTAACCCCTAACCGTAAAGCAAGTGAGGCGCGCGTAGTATATAAACACAGCAGCCGTAAGCTCTCAAAATCACTCTGCTGTTTTCAAAACCCTAATCTCTAGAAACGTAGGGTTTTGCAGAGCCTCTCTCGCCCCATCGTTACCCTTATTTAACGCGAGACTCCTTTACTGTTTCTTTCATTCCTTTAATCTCAGATGGGCAAATCAAGCAAGAAATCTGCTCTCAAGGTTGATGCTGCTGCAGCTGTGGTTTCGCCATCCAAGTCTGCCAAAAAGGGTGGCAAGAGACAGGCTGAAGATGAAGTTGAGAAGCAAGTGAGCGCAAAAAAACAGAAGATAGAGGAGGTTGCCCAGAAGCAAAAGAAGGAAACAAAGGTGCAAAAGAAGGTGGAAAGTAGTTCTGATGATTCATCAGAATCCGAAGATGAGAAGCCTGCAGCCAAATCTGCTGTTCTTTCGAAAAAGGTACCTGCTAAAAATGGTGCTCTAAGTGCCCCAACAAAACAAGGCAAACCAGCCTCCAGCTCTTCTGAATCATCTGAAGATGAATCCTCCGATGAGGATGATATGAGTGCGAAGAAGCCACAGAAATTGGTTGTTGTTAAACAAAAGGTAGCATCTCTGCAAAAGAAGAAGAAGGAAAGTACTTCGGATGATTCTTCAGATTCTGAAGATGAGAAACCTGCTCCTAAAACTGCTGTACCTTTAAAAAAGACACCTATTAAAAATGGCAATTCAAGTGCTCCAGCAAAGAAAGCCAAGCCAGCTAGCAGCTCTAGTTCTTCTGAAGATGACTCCTCTGAAGATGAGAAACCTGCAGCAAAGGTTGCTGTTCCTTCAAAAAGCCAATCTGGAAAAAATGGTACTCTAAATGCACCTGCAAAGAAAGGCAAGCCAGCTGCCAGTTCAAGCTCTTCTGATTCATCTGATGACTCCTCTGATGAGGATGAGGCTCCTAAACCCAAGATTCCTGTTGCAAGCAAGAATGTACCTGCTTCTACAAAGAAAAGTCAGCCAACCTCAAGTTCGGATACTACTAGTTCTGAGTCTGTTTCTGATAGCAGCTCTGATAAGGACCGCATCAAGAAAAAACCTGCAATTACGAAGCTGCCTGCATCGTCAGTAGCTCCACCTAAGAAAGTGCAAAGCTCAGATGATGAAGATGTAAGTTGCAGTTTATTAGGTGATGCAAACCTTGCTGTAGATGCTGCGTCAAAGCCTTCTGCAGTAGGTAAAAAGAAAGTTGGTAGCTCTGATTCTGATGATAGCAGCTCCGATGAAGACAATAAAAATGCTGCCAAAACTGTTTCCAATGCCAAGTCAGTGCCCTTGTCTAATCAGCAGACTGTTAAGAAGGGAAGCAGTAGTGATTCAGATGAAGATGAAACTTCTGATAGTGATTCTGATAATGAAATGAAAACTGCAAAAGTTTCTAATGTTAACAAGAAACCAGCTCCTGTTGCAAAGACAACTGCTAAAAAGGACAGTGGAAGTTCATCAGAGAGTGATTCCTCAGATGATGAGGGGAAGAAGATGGATATTGATGAGGATGACAGTTCTGATGAAAGTGAAGAACCCCAAAAGAAAAAGACTGTGAAAGTCTCAAAAGAAAGCAGTGATAGTTCTGAAGACAGTGAGGAGAAACCCTCCAAAACTCCTCAGAAAAGAGTTAGAGATGTGGAAATGACTGAAGCTGTGTCATCGGGAAAGAAAGCTGTATATCCCAAAACCCCAGCTACACCAAATCAAGACAGTGGTGCTTCAAAGACAATATTTGTTGGAAACTTGTCATTCAGTGTTGAAAAGGCTGATGTGGAAAATTTCTTCAAAGATTGTGGAGAAGTTGTTGATGTTCGTCTGGCTGTCGATGATGGTGGAAGGTTTAAAGGATTTGGACATGTTGAATTTGCAACAGCAGAGGCTGCCCAAAATGCCCTTAAGTTGAATGGACAAGATTTGTTTAATCGTGCACTCCGCCTTGATTTAGCCCAGGAAAGGGGTTCATATACTCCCAATAGCAGCAACTGGAACAACTCATCCCAGAAAAGTGGTAGAGGTCAGTCTCAAACATTATTTGTTAGGGGTTTTGATAAATCCCTTGGGGAAGATGAGATAAGAGCTAGTTTGCAAGATCATTTCGGTTCATGCGGGGAAATTACAAGGATATCTATTCCAAAAGATTACGAATCTGGGACTGTTAAGGGGTATGTTTATTTCTTGAAAACTCAACTTGTGTTTGCTTACCTGGACTTTGTTGATGCGGATAGCATGAGCAAAGCTCTAGAACTCCATGAAACTGAACTTGGAGGTTATACCTTGTCAGTTGATGAAGCCAAAGCTAGAGATCAAGGTTCTGGTGGTAGAGGTGCAGGTGGTGGACGTGGTGGTGGTGGTGGTGGTCGATTTGGTGGGCGTGGTGGTGGTGGTCGTTTTGGTGGAAGTGGTGGTGGTGGTCGTTTTGGTGGAAGTGGTGGTGGTGGTCGATTTGGTGGTGGTGGAAGGGGGCCGAGGAAGGGGTGGTGGTGGGAGGGTCGTGGAACACCAAATCGTCCCAATCTTGCTGCAGAAGGCACAGGGAAAAAGACCAAATTTGCTGATGACGAGTAGGGTGGCAGTCTTGCAGACTGAATTTTATATTTATTTTGCTTACCGGTTGTATGGGTTCCCCAGTTTTGTTTTGGTAGCAGTAGAATTCAGATAATTCTATTGAAAAATTTGCTTACTATCGCATAATAGTAGTTTTGTTTTTGGTAACAATAGAATTCTGAGAATTGTGTTGAAAAATTTGATTGATACATTGTCCTATATATTCTATTGCTTACTATCGCATAATAATAGTATTTCTTGCCATCC 2913 0.4284 MGKSSKKSALKVDAAAAVVSPSKSAKKGGKRQAEDEVEKQVSAKKQKIEEVAQKQKKETKVQKKVESSSDDSSESEDEKPAAKSAVLSKKVPAKNGALSAPTKQGKPASSSSESSEDESSDEDDMSAKKPQKLVVVKQKVASLQKKKKESTSDDSSDSEDEKPAPKTAVPLKKTPIKNGNSSAPAKKAKPASSSSSSEDDSSEDEKPAAKVAVPSKSQSGKNGTLNAPAKKGKPAASSSSSDSSDDSSDEDEAPKPKIPVASKNVPASTKKSQPTSSSDTTSSESVSDSSSDKDRIKKKPAITKLPASSVAPPKKVQSSDDEDVSCSLLGDANLAVDAASKPSAVGKKKVGSSDSDDSSSDEDNKNAAKTVSNAKSVPLSNQQTVKKGSSSDSDEDETSDSDSDNEMKTAKVSNVNKKPAPVAKTTAKKDSGSSSESDSSDDEGKKMDIDEDDSSDESEEPQKKKTVKVSKESSDSSEDSEEKPSKTPQKRVRDVEMTEAVSSGKKAVYPKTPATPNQDSGASKTIFVGNLSFSVEKADVENFFKDCGEVVDVRLAVDDGGRFKGFGHVEFATAEAAQNALKLNGQDLFNRALRLDLAQERGSYTPNSSNWNNSSQKSGRGQSQTLFVRGFDKSLGEDEIRASLQDHFGSCGEITRISIPKDYESGTVKGYVYFLKTQLVFAYLDFVDADSMSKALELHETELGGYTLSVDEAKARDQGSGGRGAGGGRGGGGGGRFGGRGGGGRFGGSGGGGRFGGSGGGGRFGGGGRGPRKGWWWEGRGTPNRPNLAAEGTGKKTKFADDE 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01174 803 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 624 715 IPR000504 GO:0003723
Pste1g01174 803 SUPERFAMILY RNA-binding domain, RBD 623 744 IPR035979 GO:0003676
Pste1g01174 803 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 626 708 IPR000504 GO:0003723
Pste1g01174 803 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 526 594 IPR000504 GO:0003723
Pste1g01174 803 Coils Coil 30 58 - -
Pste1g01174 803 MobiDBLite consensus disorder prediction 27 84 - -
Pste1g01174 803 SMART rrm1_1 625 711 IPR000504 GO:0003723
Pste1g01174 803 SMART rrm1_1 525 596 IPR000504 GO:0003723
Pste1g01174 803 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 524 600 IPR000504 GO:0003723
Pste1g01174 803 MobiDBLite consensus disorder prediction 458 500 - -
Pste1g01174 803 MobiDBLite consensus disorder prediction 1 521 - -
Pste1g01174 803 CDD RRM1_NUCLs 525 601 IPR034349 -
Pste1g01174 803 MobiDBLite consensus disorder prediction 603 622 - -
Pste1g01174 803 MobiDBLite consensus disorder prediction 142 167 - -
Pste1g01174 803 Gene3D - 609 750 IPR012677 -
Pste1g01174 803 MobiDBLite consensus disorder prediction 265 287 - -
Pste1g01174 803 Gene3D - 449 608 IPR012677 -
Pste1g01174 803 MobiDBLite consensus disorder prediction 714 803 - -
Pste1g01174 803 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 81 670 - -
Pste1g01174 803 MobiDBLite consensus disorder prediction 350 364 - -
Pste1g01174 803 SUPERFAMILY RNA-binding domain, RBD 523 673 IPR035979 GO:0003676
Pste1g01174 803 MobiDBLite consensus disorder prediction 174 197 - -
Pste1g01174 803 MobiDBLite consensus disorder prediction 365 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01174 Pste-Chr1 3758219 3764708 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01174 526 697 Eukaryotic Initiation Factors Gene Family AT4G34110 30.682 1.26e-10 63.2