Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01172 ATGATGGAAGAGAGAAATAATGATGCAGAAAAACTTGATGAAGTTATTCTACCAGGGTTCAGGTTTCATCCAACTGATGAAGAGCTTGTAGGGTTTTATCTCAAGAGAAAGATTCAGCAGCGCCCTTTGACTATTGAGCTCATCAAGCAGCTTGATATCTACAAGTATGACCCTTGGGATCTTCCAAAGTTGGCCACAACAGGAGAGAAAGAGTGGTATTTCTACTGTCCCAGGGACAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGGTTTTGGAAAGCTACTGGGACTGATAGGCCTATCTACTCCTCAGAAGGTTCCAAGTGCATTGGCCTGAAGAAATCCCTAGTGTTTTACAAAGGTAGAGCTGCCAAAGGAGTCAAAACTGATTGGATGATGCATGAGTTCAGGCTACCTTCTCTCACTGACTCACTATCTCCAAAGTACATAGAGAAGACCATTCCTGCTAATGAATCTTGGGCTATCTGCAGAATATTCAAGAAAACCAATGCTACTGCTCAAAGAGCTTTATCTCACTCTTGGGTCTCTTCCCTGTCTGAAACAAGAGCCTCTGATCATATCCTAACCAAAGATCAAAACAACGCCCAGTTTTGTTCGGAGAACATGCCAATGACAAAGAAAACTAGCTTAGCCAGCCAGTTTTGTACTAACAATTACAATGATACACAACCCTTAACCACTAATAGTAGTAGCAGTACTCTTTGTCCCTTAGATGTTGCCTCATACAAATCGATCATTAACCCATTGCTTTACAAAGCCTTTGATCATTTTCCCATTTCAAACGGTGACCTCAGCACAAGCCTGCTATTCTCATCTCCCTTCGAAACATCACACACCGACACCAAATCCACAATGGACGTTTCTTCCATGTTGCTGAACATGTCATCCTCGGTGTTTGAAGATTTTAACAAGACTTCAGAGGATAGTACAAACACAAACACAAATACAACTTCAAACTTCGGTGAGTTGCAATTAGAGGACTGTGGTGGCTACCCAATACCATTTCTACGTGAGATGCAAAGCACATTTGGTAACCAACATTATGATAATATTAATTCATTGGTAAAGGGTCCTAATGTGAATGTGCCTCTTGTCGATGAACAAGAGTTAGAGTTGGAGACAGTACGATCCATTGGGTTTCCATTTAGTAGCATGCCATTCAATATTGGTGATGCATGGAAGTCAAATCTGCTTTGGGATACTTCCACGTTTCCGTGTGATGTGCCATCTAGTTATTCCACAACTAAGTGCTATACCTAA 1296 0.4151 MMEERNNDAEKLDEVILPGFRFHPTDEELVGFYLKRKIQQRPLTIELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDSLSPKYIEKTIPANESWAICRIFKKTNATAQRALSHSWVSSLSETRASDHILTKDQNNAQFCSENMPMTKKTSLASQFCTNNYNDTQPLTTNSSSSTLCPLDVASYKSIINPLLYKAFDHFPISNGDLSTSLLFSSPFETSHTDTKSTMDVSSMLLNMSSSVFEDFNKTSEDSTNTNTNTTSNFGELQLEDCGGYPIPFLREMQSTFGNQHYDNINSLVKGPNVNVPLVDEQELELETVRSIGFPFSSMPFNIGDAWKSNLLWDTSTFPCDVPSSYSTTKCYT 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01172 431 ProSiteProfiles NAC domain profile. 16 173 IPR003441 GO:0003677|GO:0006355
Pste1g01172 431 FunFam NAC domain-containing protein 35 25 176 - -
Pste1g01172 431 SUPERFAMILY NAC domain 15 173 IPR036093 GO:0003677|GO:0006355
Pste1g01172 431 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 241 - -
Pste1g01172 431 Gene3D NAC domain 25 178 IPR036093 GO:0003677|GO:0006355
Pste1g01172 431 Pfam No apical meristem (NAM) protein 18 143 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01172 Pste-Chr1 3752660 3754180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01172 2 261 NAC Transcription Factor Family AT1G26870 62.500 2.34e-110 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste1g01172 NAM 7.7e-37 No_clan