Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01169 AAGTCTTCCCCTTGCTCTTTTCACAAATCACCTCTTTCTAGAGTGGGGAAGAGAAATAGAGTGAGAGAGAGAGAAAACAGCACAAAGATGGAGCTTTCTCAACTTGGTTTTCTGGATGAGCTACTTGCTCCAAGAAAAGACACTTGGAGTGCTTTGTCCACTGGGTTGAACGAATTACTCCCAAGTGGTTGGAGCTTTGACTCTTTTGATGAGAACCATGGTTTAGCTACTTTGAATCCCTCATTTGCTGCATTTTCAACTCCACTAGACCACAGATTTGAATGTCCTTATGGAGGTGAAGCAGCATACCCTTTTGTTGATGGCTTCACATTGCCAGAGCTTGATTCATCATACACCAGGAATGATGAATCAGCACCACTTTTGCCACAAGAAGATAAACCATCATTGGAGGATGAAGAGTTTGGCTTTCTGGGAAGTGATAACCAGAATTTGGAACAGGCAAAAATTGGCTGCAAAATTGAGGAACAGGTGACAGAGATTCCAGTCTTCAACATGGGCTTGTGTGGAGAGAAAAAGCCCAAATCCAAAAAACTAGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGTTTGAATGATAGGCTTTCCATGCTTAGGTCAATAGTTCCTAAGATTAGCAAGATGGACAGGACCTCCATTCTTGGAGATACCATTGATTACATGAAAGAGCTTTTAGAAAGGATAGGTAAGTTGCAAGAAGAAGAAATGGAGGAGGGAACAAACCAAATAAACTTCTTAGGCATTTCCAAGGAGCTAAAGCCAAATGAAGTAATGGTAAGAAATTCCCCCAAGGTATGGTTTAGTTCTAGTGACTCAGTCAAATACCTGAACTGA 870 0.4172 MELSQLGFLDELLAPRKDTWSALSTGLNELLPSGWSFDSFDENHGLATLNPSFAAFSTPLDHRFECPYGGEAAYPFVDGFTLPELDSSYTRNDESAPLLPQEDKPSLEDEEFGFLGSDNQNLEQAKIGCKIEEQVTEIPVFNMGLCGEKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEMEEGTNQINFLGISKELKPNEVMVRNSPKVWFSSSDSVKYLN 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01169 260 Pfam Helix-loop-helix DNA-binding domain 164 207 IPR011598 GO:0046983
Pste1g01169 260 Gene3D - 150 224 IPR036638 GO:0046983
Pste1g01169 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Pste1g01169 260 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 128 247 - -
Pste1g01169 260 SMART finulus 164 213 IPR011598 GO:0046983
Pste1g01169 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 218 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01169 Pste-Chr1 3731248 3732326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01169 141 248 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G65640 70.175 2.14e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste1g01169 HLH 4.8e-10 No_clan