LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g01143	ATGTACGGACAAAGTAACTACGAGTCCGATTTGGCCCTTTTGGACTCCATTCGCCGCCACTTGCTCGGCGACTCCGAGGAACACAAATTTGGAGCCCCAAATGTTAATTCGGGAAACACTCAAGTTTACTCTCGGAGCTCCAGTTTCGGCAGGTTGTACCCGTGCTTGAGTAACGAGTGGGGCGAACTTCCTCTTAAAGAAGATGACTCAGAGGACATGCTTCTTTACGATGTGCTTCGCGATGCCATTAACGTCGGCTGGGTCCCATCTCTCGATGCCGCTTCACCCCAGACTTTCTCTTCGGTCACGGTCAAATCCGAACCCCATCTACTTCTGTTACCGCCGGAACCGCTTTTTATCCCTCCGGTGGTTCAGAAGCTGGAGCCGCCAGCGCCTCCGGCAAAGGGGAAGCACTACCGCGGCGTCAGGCAGCGCCCCTGGGGTAAATTCGCCGCGGAGATTCGCGACCCGGCTAAAAACGGGGCTCGGGTTTGGCTAGGGACTTTTGAAACGGCTGAGGACGCCGCGCTGGCTTACGACCGAGCCGCGTATCGAATGCGCGGCTCGCGGGCTTTGCTCAACTTCCCGCTTCGGATCAATTCGGGCGAGCCCGAACCGGTTCGGGTGACGGGCAAGCGAGCTTCGCCGGAACCTTCTTCTTCGTCGGAGAGTGGGTCGTCGGGGAAAAGAAGGAAGAAAGTGGTGGGGCCCACGGTGACGGCTCAAAGTGGATTGAGAACGGAGCAAGTGGGAAGTCAAGTGGCTCAGTGCACACGTGCGGAACAGATATTGGTTAGCTAA	801	0.5705	MYGQSNYESDLALLDSIRRHLLGDSEEHKFGAPNVNSGNTQVYSRSSSFGRLYPCLSNEWGELPLKEDDSEDMLLYDVLRDAINVGWVPSLDAASPQTFSSVTVKSEPHLLLLPPEPLFIPPVVQKLEPPAPPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRVTGKRASPEPSSSSESGSSGKRRKKVVGPTVTAQSGLRTEQVGSQVAQCTRAEQILVS	266

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g01143	266	MobiDBLite	consensus disorder prediction	203	252	-	-
	Pste1g01143	266	PRINTS	Ethylene responsive element binding protein signature	162	178	IPR001471	GO:0003700\|GO:0006355
	Pste1g01143	266	PRINTS	Ethylene responsive element binding protein signature	139	150	IPR001471	GO:0003700\|GO:0006355
	Pste1g01143	266	SMART	rav1_2	138	202	IPR001471	GO:0003700\|GO:0006355
	Pste1g01143	266	SUPERFAMILY	DNA-binding domain	138	198	IPR016177	GO:0003677
	Pste1g01143	266	ProSiteProfiles	AP2/ERF domain profile.	138	196	IPR001471	GO:0003700\|GO:0006355
	Pste1g01143	266	Pfam	AP2 domain	138	188	IPR001471	GO:0003700\|GO:0006355
	Pste1g01143	266	FunFam	Ethylene-responsive transcription factor 2	137	197	-	-
	Pste1g01143	266	CDD	AP2	137	196	IPR001471	GO:0003700\|GO:0006355
	Pste1g01143	266	PANTHER	DNA-BINDING DOMAIN	107	229	IPR044808	GO:0003700\|GO:0009873
	Pste1g01143	266	Gene3D	AP2/ERF domain	137	199	IPR036955	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g01143	Pste-Chr1	3682754	3683554	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g01143	1	265	AP2-EREBP Transcription Factor Family	AT4G17500	50.000	9.11e-81	242

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Pste1g01143		AP2	1.1e-14	CL0081