Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01141 GGCATTTATTTTCCGTTTTGCCACTTTCCTTTCCGTCGACTCGGTTTAATTGCTTTTGTTTGGTTTTTCCGTCTTAAGACTTCATTGATTGAGCTTCTTTCTCATCTCAACCCAACAAAACCTTTTGTTTCTTTCTGCTTATGGAAGGCCCTTAAACTTTCTCACTTTTGCATTTTCTTCTGAAACCAAAACCAGTTTTCTTCTGTCTCTCATCTCTACCAAAACTCGTTTCCTTAGCGCTTTCAGGTAGAATGTGCGCACGCCTGCTCAACTTTTCTTCTCTTTTTCAAAATGTTTTGGTAAACTTTGTATGTCTGTGGATCTATTTTGCTGGTGCAGCTTTTTTTGGTTCGTTTGTGTTTGGAGTGTGATGTCGCCCCCGGCGGTGGTAACGGAAGAGGAGGGGCGGAGCAAGGTGTTGTCAACCGTTCCTTCTGGTTCTTCGCAATCCTTGGATTGTTTCTCTCAGAGTGTGGCTGGATTGAAGGAACGGAATTATTTAGGGTTGTCTGATTGCTCATCAGTGGATAGTTGTGCTTCTACTGTGCCAAGCTTGTGTGATGAGAAAAAGGAGAACATGAATTTGAAGGCTACGGAGTTGCGGCTGGGTCTTCCCGGATCCCAATCTCCTGAAAGGGAACATGATCTTTTTTCTTTAAGCTCAGCAAAACTTGATGAGAAGCCACTGTTCCCTTTGCTTCCTACCAAAGACGGGATTTGCTCGTCCTCGCAGAAAACTGTAGCTTCTGGCAACAAAAGAGGTTTTGCTGATACCATGGACGGGTTTTCTCAGGGGAAGTTTAATAGTAATACAGGGATGAATGCAATGCTATCATCACCAAGGCCATCTGGAACTCAGCCTACTGCAATGAAAGAAATGCCAAGCAAGTTGCAAGAACGACCTTGTTCAGCTAATAATGGAACCAGTCATAACCATGCAGGTGCTTCAATCAGTGGAAGTGCACCGGCTCCTAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCATTCAGGAAAAACTCTATGGCCACCACATCTAACAAGAACAATGATGAAGTCGATGGAAAACCAGGTGGTGGTGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTTAGGAAGGTGGATCTAAGAAGTTATACAACATATCAGGAACTATCTTCTGGCCTTGAGAAGATGTTCAGCTGTTTTACCCTTGGTCAGTGTGGTTCCCATGGAACTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAGGGATCTTCTTCATGGTTCAGAGTATGTCCTGACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTACCGTGGGATATGATGGAACCCCTGATAGTTTCTACTAAGGTGTATGCTACAGAGATGAGGTTGGGATCTCAGAGGTTTAGCACAAGTGGAATGTTCACTGAAACTTGCAAAAGGCTGAAAATTATGAAGGGTTCTGATGCCATTGGCTTAGCTCCTAGGGCCATGGAAAGTCGAAAAGCAGGAGTTAGTTATCCCGTATCCGGGACTGCCTTTCGTCTAACCAAAAGCTTTACTGCTGGATCCGGAGTGGCAAAAGCAAGGGATGATGACTGAATTCCCTGGCATTGATGGTTTAACGACCTTCCGTTGTTATTTATGTTTATGTACCTTAAGAGTTTGTCTTGGTCTTACTTTAATTTGTTACCACTACAATATCATATGAAGCTACATTGGAAAATTACGATTTGTGGAGTCTGTAATCATATAGGAATCTGTTTGTTTGGACGAATTGAAGTTGTTAAAGCCAACATACGGTTCTAACACTCATTTGTTATTTACATCTGTCGCGCATTCTTTATCTTCATTTTCCCCTTTAGATCATCAACACTTATTACATGTCCACCCTTAAGGGTGTGAAAATGGGTCTGCCCATTATTAAAATCTGGTCAGATATTGTGAAAGCTATAAGGCCTTTTTATGTCCTTA 1984 0.4274 MSVDLFCWCSFFWFVCVWSVMSPPAVVTEEEGRSKVLSTVPSGSSQSLDCFSQSVAGLKERNYLGLSDCSSVDSCASTVPSLCDEKKENMNLKATELRLGLPGSQSPEREHDLFSLSSAKLDEKPLFPLLPTKDGICSSSQKTVASGNKRGFADTMDGFSQGKFNSNTGMNAMLSSPRPSGTQPTAMKEMPSKLQERPCSANNGTSHNHAGASISGSAPAPKAQVVGWPPIRSFRKNSMATTSNKNNDEVDGKPGGGALFVKVSMDGAPYLRKVDLRSYTTYQELSSGLEKMFSCFTLGQCGSHGTPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWDMMEPLIVSTKVYATEMRLGSQRFSTSGMFTETCKRLKIMKGSDAIGLAPRAMESRKAGVSYPVSGTAFRLTKSFTAGSGVAKARDDD 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01141 433 Gene3D - 255 367 - -
Pste1g01141 433 FunFam Auxin-responsive protein 253 363 - -
Pste1g01141 433 ProSiteProfiles PB1 domain profile. 258 358 IPR000270 GO:0005515
Pste1g01141 433 Pfam AUX/IAA family 374 396 IPR033389 -
Pste1g01141 433 Pfam AUX/IAA family 95 347 IPR033389 -
Pste1g01141 433 MobiDBLite consensus disorder prediction 196 213 - -
Pste1g01141 433 MobiDBLite consensus disorder prediction 159 189 - -
Pste1g01141 433 SUPERFAMILY CAD & PB1 domains 255 352 - -
Pste1g01141 433 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 90 392 IPR003311 GO:0005634|GO:0006355
Pste1g01141 433 MobiDBLite consensus disorder prediction 155 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01141 Pste-Chr1 3678122 3683695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01141 262 367 B3 DNA Binding Superfamily AT4G23980 29.091 3.24e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pste1g01141 AUX_IAA 6e-75 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01141 1 3678122 3683695 Pste1g01141 1 3678122 3683695 ECH