Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01107 ATGACGGTTGAAAAGGAAGATTTGGGGTTGAGTCTGAGCTTGAGCTTCCCTCACAATCCCCCAAACCCTCTTCATCTCAATCCCCTTTCCTCTCCTCTCAAACCCTCTTGGAACGACGACCCTTTCACTTCTTCAGGTATGCGTCATTCCGCTTCTTTTCTCTTTCTCTTTTGCTTTAAGGCATCTTCTACTCCTTTTTTGTTTTTCAACAACTTCACTGCTCATTCAAAGTTTCCTATTTTCCCCCCCCTCTTTTCTCAACTCTCAACACTTTTAAGCAAGTCAACATTTTTGCATGCAGGTGAAGCTGGACCATTCCTCCGCGGAATCGATGTGAACCGGTTGCCTTCCGTGGTTGATTGCGAAGAGGAAGCAGCCGTTTCCTCTCCAAACAGCACCGTTTCTAGCGTCAGCGGAAAACGTAGCGAGAGGGAAGCCAATGGGGAAGAAAACGAAAACGAAAACGAAAACGAAAACGAAAACGAACACGAACACGAACACGACACAAACAGAGCCTGTTCCAGAGGCATCAGTGACGAAGAAGAGGGAGAAACCTCTAGAAAGAAACTTAGACTCTCCAAAGACCAGTCAATTATTCTGGAAGAGAGCTTCAAAGAACACAACACTCTCAACCCCAAGCAAAAGTTGGCACTGGCAAAACAGCTGGGACTTAGAGCAAGACAGGTGGAGGTGTGGTTCCAGAACAGAAGGGCAAGGACGAAGTTGAAACAAACGGAGGTGGACTGCGAGTTTTTGAAGAGGTGCTGCGAGAATCTAACGGAGGAAAACAGGAGGCTGCAGAAGGAAGTGCAAGAGCTTAGAGCACTGAAACTCTCCCCGCACATGTACATGCACATGACCCCACCCACCACCCTCACCATGTGCCCCTCGTGTGAGCGTGTCGCGGTTCCCCCCTCTACCGTCGATGCTGCCACGCGTCACCATCACACCCGCCCCTTCCTTCGATGCCCTCCCTCCCAGATCTTGACTTCCCCTTGGGGAAAACGGAACCCCTGAATTCTGTGTTCTAAGATATGGTGGTTAGGACAATTGATTTTATCCCTCTCTAACGTTTTCTACTACTTTGACCCTTCCCCCCTTTTCTACTTACTTAACCTTTTTATTTTCTAATTCTTACTTCCATTTCTCATCATTAATCATCCCACACTTTCTGTAAAGTTCAATAGTCTATATATAGCTTTCTTTTGTAAGCTAATTTTGTTCTAATGCCTCTAAGTCAAATTCATATCTGGGTTGATTGTAATCATTTATTATATTACCTCAAGATCCTTGGTTGGTTTCGAAGATGCCAATTTGACAAAAGGAAAAAAAGGAAATTAAACATTGTAAAAAGAGTTTGCCCTACGTGACTAAACCATGTTCAACAATTGATGATGCCTTAGTAAGCATTGGCAGATTTGTAAGTTGTATATGCCTATTTTATTAAAATTGCCCTCTCTCCG 1463 0.4463 MTVEKEDLGLSLSLSFPHNPPNPLHLNPLSSPLKPSWNDDPFTSSGMRHSASFLFLFCFKASSTPFLFFNNFTAHSKFPIFPPLFSQLSTLLSKSTFLHAGEAGPFLRGIDVNRLPSVVDCEEEAAVSSPNSTVSSVSGKRSEREANGEENENENENENENEHEHEHDTNRACSRGISDEEEGETSRKKLRLSKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPHMYMHMTPPTTLTMCPSCERVAVPPSTVDAATRHHHTRPFLRCPPSQILTSPWGKRNP 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01107 338 Pfam HD-ZIP protein N terminus 3 145 IPR006712 GO:0005634
Pste1g01107 338 MobiDBLite consensus disorder prediction 122 190 - -
Pste1g01107 338 Coils Coil 242 279 - -
Pste1g01107 338 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 110 314 - -
Pste1g01107 338 ProSiteProfiles 'Homeobox' domain profile. 183 243 IPR001356 GO:0003677
Pste1g01107 338 Pfam Homeodomain 187 241 IPR001356 GO:0003677
Pste1g01107 338 SUPERFAMILY Homeodomain-like 178 244 IPR009057 -
Pste1g01107 338 Pfam Homeobox associated leucine zipper 243 277 IPR003106 GO:0006355|GO:0043565
Pste1g01107 338 Coils Coil 139 166 - -
Pste1g01107 338 CDD bZIP 234 275 - -
Pste1g01107 338 ProSitePatterns 'Homeobox' domain signature. 218 241 IPR017970 GO:0000981|GO:0006355
Pste1g01107 338 SMART halz 243 286 IPR003106 GO:0006355|GO:0043565
Pste1g01107 338 SMART HOX_1 185 247 IPR001356 GO:0003677
Pste1g01107 338 MobiDBLite consensus disorder prediction 126 141 - -
Pste1g01107 338 MobiDBLite consensus disorder prediction 158 190 - -
Pste1g01107 338 PRINTS Lambda-repressor HTH signature 223 239 IPR000047 GO:0003677
Pste1g01107 338 PRINTS Lambda-repressor HTH signature 214 223 IPR000047 GO:0003677
Pste1g01107 338 FunFam Homeobox-leucine zipper protein 18 173 248 - -
Pste1g01107 338 CDD homeodomain 187 244 IPR001356 GO:0003677
Pste1g01107 338 Gene3D - 191 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01107 Pste-Chr1 3559965 3561595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01107 1 307 Homeobox Transcription Factor Family AT4G17460 54.662 6.01e-96 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste1g01107 HD-ZIP_N 1.9e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01107 1 3559965 3561595 Pste7g00554 7 5160633 5162523 PCT