Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste1g01088 | GGTGAAGGGGCGAATGGCGAAGCCCCGAGTCGGTGGGAGGGCAGTGGTCGGGCTGAGCGGGTCAGGCAGCAGCGGCGGTTGTATTGAAAGAGACGGTGGGTTTGTGTCAGTCCTCTGCGACATCGTTAGAGGAAAGCAGAGTTGGAAGGTGGCTTTGAATGAAGCTTGTTCGATTTCAAGCGAACACGTGGAACAGGTGTTGATGAAGACACTCGACGATCCCAAGTTAGGTCTTAGGTTCTTCAACTTTCTGGGTCTCCACAAAAGCATGAAGCACTCGACCACCTCCTTCGCCATCTTGGTTCACGCCCTCGTTCACTCTCGCCTCTTCTGGCCCGCTAATTCCCTCTTGCATACCCTTCTCCTTCGTCCCTCTCTCCCCCAACACCTTTTTCCCACTTTCTTCTCTCTCACCAACAATAATTACATCCTCCATTCAAGAGTCTTTGATGCTGTCGTTATTCTAAAACTCATGTTCGCCAACAATTTGTTGCCTCAAGTTAGAACTTTGAGTGCCCTCTTCAACGGGCTCTTGAGAATTAGAAAATTCATTACGGTTTGCGAATTGTTTGATGAATCTGTTAATGCTGGTGTTCGACCTGATCCTTATACTTGCTCCGCTGTGCTTCGGAGCCTCTGCGAATTGAAGGATTTCTTAAAAGCTAAGGAGAAGATTCTGTGGATGGAAGCTAATGGGTTTCATTTGACTACTGTAACTTATAATGTCTTGATTCATGGGCTTTGCAAGGGTGATCGTGTTTGGGAAGCTGTTGAGGTTAAAAGATCGTTGGGTGACAAGGGTCTCAAAGCCGATGAGGTTACATACTGTACATTAGTGCTTGGTTTTTGCAGGATTCAACAATTTGAGGCCGCAATTCTTCTTATGGATGAAATGATTGAATTGGGTTTTGCTCCTTCCGAGGCTGCTGTGTCGGGGTTAGTAGATGGATTGAGAAAGCTCGGAAAAATTGATAATGCTTACGCCCTCGTAGTTAAGGTAGGGAGATCTGGTTTTGTGCCGAATTTGTTTGTTTATAATGCGTTAATCAACTCTTTGTGCAAAGATGGAGATTTGGATAAAGCGGAGTTGCTTTATAATAATATGAGTGTGATGAACTTGCGTCCCAATGGTATTACTTATTCTATTCTGATTGATTCCTTTTGCAGAAGGGGGAGCTTGGATGTTGCAATATCTTATTTTAATAAAATAATAGAAGATGGTATAAGAGAAACTGTATATGCCTATAACTCTTTGATAAATGGATACTGCAAGTTTCAGTGTTTGAGTGCTGCTGAGTCTCTCTTTACTGCAATGATCAATAAAGGTGTGGAGCCAACTGCTACAACCTTTACATCGTTGATTAGTGCATATTGCAAAGACTTACAAGTACAAAAAGCATTTGAGCTATATAATAAGATGATTGAGAAAGGAATTACTCCAAACATTTATACTTTCACTGCACTTATTTCTGGGCTTTGTAGCACAAATAAGATGGTTGAAGCATCCAAGCTTTTCGATGAATTGGTTGAAAGGAAAATTAAGCCAACAGAGGTGACATATAATGTTTTGATCGAAGGGTATTGTAAGGATGGCAATATTGATAAAGCCTTTGAATTGCTTGAAGACATGCATCAAAAGGGCCTTGTTCCTGACACATATACCTTCAGACCTCTTATCAGTGGCCTTTGTTCTGCTGGTAGGGTTTCTAAAGCAAAAGATTTTATTGATGGCCTCCACAAGAAAAACGTAAAGTTAAATGAGATGTGCTATAGTGCACTTCTACATGGTTATTGCCTGGAAGGAAGATTGATGGAGGCGCTGAGTGTTTCTTGTGAAATGATTCAAAGAGGAATCAACATGGATCTGGTTTGCCATGCTGTTCTTATTGATGGTGCTCTAAAGCAGCCAGACAGAAAAAAGTTTTTTGGTCTCTTAAAAGATATGCATGATCAAGGGTTGAGACCTGATAATGTAATATATACAAGTATGATTGATGCTTACAGCAAAGAAGGATCATTTAAGAAAGCTTTTGAATGCTGGGATTTGATGGTTACCGAGGAATGCTTTCCTAATGTTGTGACTTATACTGCTTTGATGAATGGTTTATGCAAAGCAGGTGAAATGGACAGAGCTGGGCTTCTTTTTAAAAAAATGCAGGCTGCAAACATCCCTCCCAATTCAATTACATATGGCAGTTTTCTAGACTGCCTGACCAAGGAGGGAAATATGAAGGAAGCTATAGGGCTTCACAATGCAATGCGTAAAGGGTTTTTAGCAAACACTGTAACATATAACATTATTATCCGAGGCTTCTGCAAACTGGGAAGATTTCATGAAGCCAGCAAAGTTCTTTCTGAAATGACTGAAAATGGTATTTTCCCTGACTGTGTAACCTATTCAACTCTAATTCATGAATATTGCAGAAGCGGTAATTTAGGAGCTGCTGTTAAATTATGGGATACCATGCTAAACAAAGGACTCGAGCCAGATCTGGTTGCATATAACTTGTTAATTTATGGCTGTTGTATTAATGGAAAGCTTGACAAAGCATTTGAATTGCGTGATGATATGATGAGGAGAGGGCTGAGTTACCTGGAAGAGTTGAGTGATGTTTGGGCAAGCTTTTGCGCATTATGATTGATCGCCTCTCTATAGCATGGCTGAAGACAAATCATGCATGCTGAGATCAGAGAATTTTCACGGATATCATAAAACTTGGTGTTAAGCAGTTGGAGCAGTGAATAATCAAATCTATGATTTGTGCCAACATGCACATAACTCGTTCATCCATCACCAAGCTTTACAGTGAAGATTCTCCTTTTGGTTTAGTCACACTCACCATAGTTCCACTTCCATTTTTCTCTTTCCAACTCCTTATAACTGTATGTCACTCACAATTAGGAGTGTTTATGATGTCTTCCGTCCAACTAACAAGTTTTAGAAATTAACCGCGGGGTATTTTGTAGACAGATCTAGGTTACACTTTGAATCATCCTAATTTAGAAATTTTGTTTTTCA | 3019 | 0.4054 | MAKPRVGGRAVVGLSGSGSSGGCIERDGGFVSVLCDIVRGKQSWKVALNEACSISSEHVEQVLMKTLDDPKLGLRFFNFLGLHKSMKHSTTSFAILVHALVHSRLFWPANSLLHTLLLRPSLPQHLFPTFFSLTNNNYILHSRVFDAVVILKLMFANNLLPQVRTLSALFNGLLRIRKFITVCELFDESVNAGVRPDPYTCSAVLRSLCELKDFLKAKEKILWMEANGFHLTTVTYNVLIHGLCKGDRVWEAVEVKRSLGDKGLKADEVTYCTLVLGFCRIQQFEAAILLMDEMIELGFAPSEAAVSGLVDGLRKLGKIDNAYALVVKVGRSGFVPNLFVYNALINSLCKDGDLDKAELLYNNMSVMNLRPNGITYSILIDSFCRRGSLDVAISYFNKIIEDGIRETVYAYNSLINGYCKFQCLSAAESLFTAMINKGVEPTATTFTSLISAYCKDLQVQKAFELYNKMIEKGITPNIYTFTALISGLCSTNKMVEASKLFDELVERKIKPTEVTYNVLIEGYCKDGNIDKAFELLEDMHQKGLVPDTYTFRPLISGLCSAGRVSKAKDFIDGLHKKNVKLNEMCYSALLHGYCLEGRLMEALSVSCEMIQRGINMDLVCHAVLIDGALKQPDRKKFFGLLKDMHDQGLRPDNVIYTSMIDAYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKKMQAANIPPNSITYGSFLDCLTKEGNMKEAIGLHNAMRKGFLANTVTYNIIIRGFCKLGRFHEASKVLSEMTENGIFPDCVTYSTLIHEYCRSGNLGAAVKLWDTMLNKGLEPDLVAYNLLIYGCCINGKLDKAFELRDDMMRRGLSYLEELSDVWASFCAL | 874 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste1g01088 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 547 | 581 | IPR002885 | - | |
| Pste1g01088 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 722 | 752 | IPR002885 | - | |
| Pste1g01088 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 407 | 441 | IPR002885 | - | |
| Pste1g01088 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 826 | 860 | IPR002885 | - | |
| Pste1g01088 | 874 | Pfam | PPR repeat | 410 | 439 | IPR002885 | - | |
| Pste1g01088 | 874 | Pfam | PPR repeat | 724 | 751 | IPR002885 | - | |
| Pste1g01088 | 874 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 23 | - | - | |
| Pste1g01088 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 267 | 301 | IPR002885 | - | |
| Pste1g01088 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 791 | 825 | IPR002885 | - | |
| Pste1g01088 | 874 | Gene3D | Tetratricopeptide repeat domain | 503 | 572 | IPR011990 | GO:0005515 | |
| Pste1g01088 | 874 | Gene3D | Tetratricopeptide repeat domain | 646 | 714 | IPR011990 | GO:0005515 | |
| Pste1g01088 | 874 | Gene3D | Tetratricopeptide repeat domain | 573 | 645 | IPR011990 | GO:0005515 | |
| Pste1g01088 | 874 | Gene3D | Tetratricopeptide repeat domain | 329 | 397 | IPR011990 | GO:0005515 | |
| Pste1g01088 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 512 | 546 | IPR002885 | - | |
| Pste1g01088 | 874 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 333 | 679 | - | - | |
| Pste1g01088 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 232 | 266 | IPR002885 | - | |
| Pste1g01088 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 442 | 476 | IPR002885 | - | |
| Pste1g01088 | 874 | SUPERFAMILY | HCP-like | 339 | 518 | - | - | |
| Pste1g01088 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 337 | 371 | IPR002885 | - | |
| Pste1g01088 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 756 | 790 | IPR002885 | - | |
| Pste1g01088 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 687 | 721 | IPR002885 | - | |
| Pste1g01088 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 652 | 686 | IPR002885 | - | |
| Pste1g01088 | 874 | Gene3D | Tetratricopeptide repeat domain | 220 | 328 | IPR011990 | GO:0005515 | |
| Pste1g01088 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 372 | 406 | IPR002885 | - | |
| Pste1g01088 | 874 | Gene3D | Tetratricopeptide repeat domain | 715 | 874 | IPR011990 | GO:0005515 | |
| Pste1g01088 | 874 | Pfam | PPR repeat | 821 | 853 | IPR002885 | - | |
| Pste1g01088 | 874 | Pfam | PPR repeat | 577 | 609 | IPR002885 | - | |
| Pste1g01088 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 477 | 511 | IPR002885 | - | |
| Pste1g01088 | 874 | Gene3D | Tetratricopeptide repeat domain | 398 | 496 | IPR011990 | GO:0005515 | |
| Pste1g01088 | 874 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 582 | 616 | IPR002885 | - | |
| Pste1g01088 | 874 | Pfam | PPR repeat family | 513 | 560 | IPR002885 | - | |
| Pste1g01088 | 874 | Pfam | PPR repeat family | 232 | 280 | IPR002885 | - | |
| Pste1g01088 | 874 | Pfam | PPR repeat family | 651 | 700 | IPR002885 | - | |
| Pste1g01088 | 874 | Pfam | PPR repeat family | 336 | 385 | IPR002885 | - | |
| Pste1g01088 | 874 | Pfam | PPR repeat family | 445 | 490 | IPR002885 | - | |
| Pste1g01088 | 874 | Pfam | PPR repeat family | 756 | 804 | IPR002885 | - | |
| Pste1g01088 | 874 | Gene3D | Tetratricopeptide repeat domain | 46 | 219 | IPR011990 | GO:0005515 | |
| Pste1g01088 | 874 | NCBIfam | pentatricopeptide repeat | 374 | 404 | IPR002885 | - | |
| Pste1g01088 | 874 | NCBIfam | pentatricopeptide repeat | 549 | 583 | IPR002885 | - | |
| Pste1g01088 | 874 | NCBIfam | pentatricopeptide repeat | 445 | 478 | IPR002885 | - | |
| Pste1g01088 | 874 | NCBIfam | pentatricopeptide repeat | 585 | 617 | IPR002885 | - | |
| Pste1g01088 | 874 | NCBIfam | pentatricopeptide repeat | 234 | 267 | IPR002885 | - | |
| Pste1g01088 | 874 | NCBIfam | pentatricopeptide repeat | 758 | 792 | IPR002885 | - | |
| Pste1g01088 | 874 | NCBIfam | pentatricopeptide repeat | 654 | 688 | IPR002885 | - | |
| Pste1g01088 | 874 | NCBIfam | pentatricopeptide repeat | 409 | 442 | IPR002885 | - | |
| Pste1g01088 | 874 | NCBIfam | pentatricopeptide repeat | 269 | 302 | IPR002885 | - | |
| Pste1g01088 | 874 | NCBIfam | pentatricopeptide repeat | 514 | 548 | IPR002885 | - | |
| Pste1g01088 | 874 | NCBIfam | pentatricopeptide repeat | 689 | 722 | IPR002885 | - | |
| Pste1g01088 | 874 | NCBIfam | pentatricopeptide repeat | 724 | 751 | IPR002885 | - | |
| Pste1g01088 | 874 | NCBIfam | pentatricopeptide repeat | 479 | 513 | IPR002885 | - | |
| Pste1g01088 | 874 | NCBIfam | pentatricopeptide repeat | 793 | 826 | IPR002885 | - | |
| Pste1g01088 | 874 | NCBIfam | pentatricopeptide repeat | 828 | 859 | IPR002885 | - | |
| Pste1g01088 | 874 | NCBIfam | pentatricopeptide repeat | 340 | 372 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste1g01088 | 391 | 869 | Glycosyltransferase | AT1G05670 | 29.792 | 1.65e-74 | 257 |