Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01080 ATGGAATTGGAGGCTGATCATCAAAATGGGATCCGAAGCAGACCCAATTTCCCTCTGCAGCTGTTAGAGAAAAAGGACGTCGATGACGTCACAGAACAACCTTGTTCCACCACCACACGAGACAGCGTGGTAACCGCTACTAATAACACTCTTCAGTTGGCGGAGCAGTCGAAGAAGCCGCCGCCAAAGCGGAGCTCCACCAAAGACCGCCACACGAAGGTGGATGGGCGAGGGCGCCGGATCCGCATGCCGGCGGCCTGCGCCGCCAGAGTGTTCCAGCTGACGCGTGAGCTGGGACATAAATCTGACGGCGAGACCATTGAGTGGCTTCTCCAGCAGGCGGAGCCAGCGGTTATAGCTGCCACCGGCACCGGCACCATTCCCGCCAACTTCACGTCCCTCAACATCTCCCTCCGCAGCTCCGGCTCCACCATGTCGGCGCCGTCGCACTACTTCCGCGGAAACTACTTCAACCCTAGCACGTTCTCCAGCTCCGCCGCCGCCGCCGCCCAGCTGAGAAGTCGCGCCGAGTGGGACCGCAACATGAGCATGGTCATGGAGGATTCTCGTAGGAACATGTTGGAGAACAGTTCTTCTATCTCAGCAATTTTGAATTTCAACCCTATGGGTAACGTGAATGTAATTCAACAAGCGAAGCAAGAGCTTAGAGAAGAATCCGGCGGCGGCCTTGAATCGGTGGCCTCGGATTCCGATGGAAGCTTAGGGAGAAAGAGAAGACCGGAACAAGAACTATCACAAATGGGTAGCTATTTGATACAATCAAGCGCGGGGTCACTTCCGGCGAGCCAGTCTTCAAATACGGCGGCGTTTTGGATGCTGGCAGGTCATGGCAACCAAGGCATGAATGGCGGCAGCAGCAATGGTGGCGAAAATCCCATTTGGGCAATTCCCTCTGTTGGTAATAGTGGTGTGTATAGAGGAGCTATGTCTACCCCAGGTGGCATTCATTTCATGAATTTTGCTTCTCCCATGTCCCTTATGCCCGGAGGCCAACTAGGTTCCGCCATGGTTGCTGGCGGCGGCGGCGGCGGCGGTGGTCAACTTCTAAGTGAAAGTAACTTAGGCATGCTGGCAGCCCTTAATGCCTATAGGCAGATTCCGGCGAACGGAGTGCCGGAGTCTCCCGCCAGCGCCGGGCAACCTCACGCCGGAGACGATGGACGTGACTCGACCAGTCAACATTCCTGA 1209 0.5624 MELEADHQNGIRSRPNFPLQLLEKKDVDDVTEQPCSTTTRDSVVTATNNTLQLAEQSKKPPPKRSSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSTFSSSAAAAAQLRSRAEWDRNMSMVMEDSRRNMLENSSSISAILNFNPMGNVNVIQQAKQELREESGGGLESVASDSDGSLGRKRRPEQELSQMGSYLIQSSAGSLPASQSSNTAAFWMLAGHGNQGMNGGSSNGGENPIWAIPSVGNSGVYRGAMSTPGGIHFMNFASPMSLMPGGQLGSAMVAGGGGGGGGQLLSESNLGMLAALNAYRQIPANGVPESPASAGQPHAGDDGRDSTSQHS 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01080 402 MobiDBLite consensus disorder prediction 61 77 - -
Pste1g01080 402 MobiDBLite consensus disorder prediction 32 60 - -
Pste1g01080 402 MobiDBLite consensus disorder prediction 1 77 - -
Pste1g01080 402 MobiDBLite consensus disorder prediction 221 252 - -
Pste1g01080 402 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 49 364 IPR005333 GO:0003700
Pste1g01080 402 Pfam TCP family transcription factor 66 204 IPR017887 -
Pste1g01080 402 MobiDBLite consensus disorder prediction 375 402 - -
Pste1g01080 402 ProSiteProfiles TCP domain profile. 67 121 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01080 Pste-Chr1 3494132 3495340 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01080 15 338 TCP Transcription Factor Family AT3G47620 42.748 1.59e-54 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pste1g01080 TCP 3.9e-38 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01080 1 3494132 3495340 Pste1g01080 1 3494132 3495340 ECH
Pste1g01080 1 3494132 3495340 Pste6g02545 6 12760505 12764384 PCT