Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01075 ATGCCACAAAACCATTCTCTTTCGTTACATAGTTCTAGTGTCTCTCCCTCTCATATATGCATGGCTGCCCCCAAGAATGACCAAATAGCAGCTAAGAAAACGAACAACAGAGGAGCATGGACCGCGGAGGAAGATCAGAAGCTAGCCCAGTGCATTGAAATCCACGGTCCAAAGAGGTGGAAAACTGTTGCAATTAAATCAGGTCTAAACAGATGTGGAAAAAGTTGCAGGCTGAGATGGTTAAACTATCTCAGACCAAATATCAAGAGGGGCAACATATCAGTTGAAGAAGAGGATTTGATTATTAGGCTTCACAAACTACTTGGAAACAGGTGGTCTTTGATAGCGAAGAGGCTTCCAGGACGAACAGACAATGAAATTAAGAACTACTGGAATACTTGTTTGTGCAAAAAGGTGAATCACACAACGGTGAAATCAGAAACTTCAACAGTACAACAAGAAATACACATGAGTACGACTCATAATATTACCGAGGAAAGAGCAGCTGTAGAGAATAAAGAAGCTACGGATTATGGGAGTGGGGACTCAGAAATTGACTTTGATGTGAACGAATTCTTCAACTTCTCCATTGAAGGACCCTTTGCGTTGGATTGGATAATCTATAACAACTGA 633 0.4123 MPQNHSLSLHSSSVSPSHICMAAPKNDQIAAKKTNNRGAWTAEEDQKLAQCIEIHGPKRWKTVAIKSGLNRCGKSCRLRWLNYLRPNIKRGNISVEEEDLIIRLHKLLGNRWSLIAKRLPGRTDNEIKNYWNTCLCKKVNHTTVKSETSTVQQEIHMSTTHNITEERAAVENKEATDYGSGDSEIDFDVNEFFNFSIEGPFALDWIIYNN 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01075 210 SMART sant 36 86 IPR001005 -
Pste1g01075 210 SMART sant 89 137 IPR001005 -
Pste1g01075 210 SUPERFAMILY Homeodomain-like 36 131 IPR009057 -
Pste1g01075 210 Gene3D - 93 165 - -
Pste1g01075 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 84 IPR017930 -
Pste1g01075 210 Gene3D - 29 90 - -
Pste1g01075 210 FunFam Myb transcription factor 37 89 - -
Pste1g01075 210 CDD SANT 39 84 IPR001005 -
Pste1g01075 210 FunFam Transcription factor TT2 93 164 - -
Pste1g01075 210 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
Pste1g01075 210 Pfam Myb-like DNA-binding domain 90 134 IPR001005 -
Pste1g01075 210 CDD SANT 94 133 IPR001005 -
Pste1g01075 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Pste1g01075 210 ProSiteProfiles Myb-like domain profile. 32 84 IPR001005 -
Pste1g01075 210 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Pste1g01075 210 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 30 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01075 Pste-Chr1 3473302 3474323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01075 37 158 MYB Transcription Factor Family AT5G40330 58.400 3.09e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste1g01075 Myb_DNA-binding 4.2e-17 CL0123