Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01042 ATGAATCTGTGGACGGACGAGAACTCGTCGGTGATGGAGGCCTTCATGTCGTCCCCGGATCTGTCGTCTATATGGCCGACGCAGACGCAGACGCAGACGGCGACGCCGCAGCCAGCCTCGACAGCCGTCTTCAATCAGGACACGCTCCAGCACCGGCTCCAGGCCCTCATAGAGGGGGCCAGAGAGAGCTGGACCTACGCCATCTTCTGGCAGTCCTCCTATGACTACTCTGGCTCCTCCCTCCTGGGTTGGGGCGACGGTTACTACAAAGGCGACGACGACAAGGCCAAAGCTAAGGCGAAGGCGAAGGCCAAAGCCACCTCGGCCGCCGAGCAGGACCACCGCAAGAAGGTCCTTCGGGAACTGAATTCCCTCATATCCGGATCCTCTGCCGCCGCCTCCGATGACGTCGACGAAGAAGTTACCGACACCGAGTGGTTCTTCCTGGTGTCCATGACCCAGTCTTTTGTGAACGGGGGCGGTTTACCAGGACAGGCTTTCTTCAACTCCTCCCCCGTTTGGGTATCCGGTGCCGACCGTCTCTCTTCTTCCCTCTGCGAGAGGGCCAGACAGGGCCACGTTTTCGGTTTGCAAACCCTCGTCTGCATACCTTCCGCTAACGGTGTGGTCGAACTCGGCTCCACCGAGTTAATTTACCACAATCCCGATCTCATGAACAAGGTGAAGGTTCTCTTCAATTTTAGTAACAACAATTTGGATGTGGCTTCTTCCTGGCCTCCCGATCAAGGCGAAAACGACCCTTCCTCCCTCTGGCTTAACGATCCCGAAGTTAGGGATTCCATTAACACTGTTCCCACTACCGTCTCTGTTCCCCCACATACTCCTCCTATTATTTCCAAACCCATGCACTTGGACACTTCTATTCAAACCCCCGGTTCCAGTTCTTTAACCGAAACTCCCAGTTCTGTTCACGCTGTCCCCCACAACCACACCGTCTTCTCCAGAGAATTGAACTTCTCCGAATACGTTTTTGACCCTAAGACTGCCTCTCTCAAGCCCGAATCTGGCGAGATTCTCAGCTTCGGCGAGAGCAAGAGAACCTCCTACCCCTCCCTCGTCAATGGGAATACCAATTCCAATTCCCACTTCTTCACCGGTCAGTCACCCTTCGTCGCTGCTGCCGATGACACCACCACCACCACCACCACCACCACCACCACCACCACCACCAATGCCAAGCGAAGGTCGCCCAATTCCCGCGGCAGCAACGACGACGGAATCCTCTCCTTCACATCCGCCGTCATTCTTCCCCCCACCAATTTGAAATCCGGCGGCGCCGATTCCGACCACTCGGATCTGGAGGCTTCCGTCGTCAAGGACCCCGTGGTTGAGCCCGAGAAGCGACCCCGTAAGAGAGGACGGAAGCCTGCAAACGGCAGAGAGGAGCCGTTGAACCATGTTGAAGCAGAAAGACAGCGGAGGGAGAAGCTCAATCAGAGGTTCTACGCCCTTCGTGCTGTGGTTCCCAACGTTTCTAAGATGGACAAAGCGTCGCTTCTGGGCGATGCCATATCTTACATCACCGAGCTCAAGTCCAAGCTTCAGACTTTAGAATCTGATAAAGATGTGTTGCAGAAGCAACTTGATGGAGTCAAGAAGGAACTCGAGAAAACACCAGAAAACGTATCTTCTAATCACGCTGCCAACACTAGTAATAACAATAAGTTGTCGTCTCTGGCGTTGATTGACTTGGACATCGACGTCAAGATTATTGGGTGGGACGCGATGATAAGGATCCAATGCAGCAAGAAAAACCACCCCGCCGCGAGGTTGATGGCGGCACTGATGGAATTGGACTTGGAAGTGCACCACGCCAGTGTCTCAGTCGTAAACGATTTGATGATCCAACAAGCAACAGTGAAGATGGGAAGTCGATTTTACACGCAGGAGCAGCTTCGTTCGGCACTGTCGGCTAAGGTTGGGGATGTACGATGA 1956 0.5435 MNLWTDENSSVMEAFMSSPDLSSIWPTQTQTQTATPQPASTAVFNQDTLQHRLQALIEGARESWTYAIFWQSSYDYSGSSLLGWGDGYYKGDDDKAKAKAKAKAKATSAAEQDHRKKVLRELNSLISGSSAAASDDVDEEVTDTEWFFLVSMTQSFVNGGGLPGQAFFNSSPVWVSGADRLSSSLCERARQGHVFGLQTLVCIPSANGVVELGSTELIYHNPDLMNKVKVLFNFSNNNLDVASSWPPDQGENDPSSLWLNDPEVRDSINTVPTTVSVPPHTPPIISKPMHLDTSIQTPGSSSLTETPSSVHAVPHNHTVFSRELNFSEYVFDPKTASLKPESGEILSFGESKRTSYPSLVNGNTNSNSHFFTGQSPFVAAADDTTTTTTTTTTTTTTNAKRRSPNSRGSNDDGILSFTSAVILPPTNLKSGGADSDHSDLEASVVKDPVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQTLESDKDVLQKQLDGVKKELEKTPENVSSNHAANTSNNNKLSSLALIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLEVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRSALSAKVGDVR 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01042 651 Gene3D - 460 549 IPR036638 GO:0046983
Pste1g01042 651 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 49 232 IPR025610 -
Pste1g01042 651 FunFam Transcription factor bHLH13 461 535 - -
Pste1g01042 651 MobiDBLite consensus disorder prediction 427 478 - -
Pste1g01042 651 Coils Coil 514 541 - -
Pste1g01042 651 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 468 517 IPR011598 GO:0046983
Pste1g01042 651 SMART finulus 474 523 IPR011598 GO:0046983
Pste1g01042 651 MobiDBLite consensus disorder prediction 290 307 - -
Pste1g01042 651 MobiDBLite consensus disorder prediction 276 307 - -
Pste1g01042 651 MobiDBLite consensus disorder prediction 434 478 - -
Pste1g01042 651 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 471 537 IPR036638 GO:0046983
Pste1g01042 651 Pfam Helix-loop-helix DNA-binding domain 472 517 IPR011598 GO:0046983
Pste1g01042 651 PANTHER MYC 21 646 IPR045084 GO:0003700|GO:0006355
Pste1g01042 651 CDD bHLH_AtAIB_like 465 541 - -
Pste1g01042 651 MobiDBLite consensus disorder prediction 382 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01042 Pste-Chr1 3349931 3351886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01042 1 648 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 54.762 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste1g01042 bHLH-MYC_N 1.7e-55 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01042 1 3349931 3351886 Pste1g01042 1 3349931 3351886 ECH