Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01038 CTAACTCAAATTGGGAACACGAAAATACGCACACAGTGAGGACAAGAACGAACGAACGAACGAACGCAACACTGAAAGGCAAAACGACGGAGCAGCAGTGAGAGAACAGAGAAGAGAGTGGTGTACGATACTGCTGCTTCGCGCTCGATCAATCGCGGATCCGTAACCGCTGCGCGACTGAATCTGGTGGAACAGAGCAGAACGAAACGACGCGCGGGTTTTGGAATCGCGTTCTAGGTTTTGAGTTTCGGTCCGATCGACCGACGATGCTGGCGAATCATTTCCAAAATGGCATCGAAACGGCGAGGTTCGTTTGGTCGCGGATTCCTAATTCCGAAGAATCGCGGCTCCTCGACGACGCCGTTGGCATCATCAAGAAGAACGATGGAGGCGGTGTTGAGAGCCTTGACTATGAAGTTATAGAGAATTTTGCTTATCGTGAGGAGCAGGCGCAGCGAGGGAAGCTGTATGTGAGTTATTTGCTGGTGGTGAAATGGTTCTTTGCTTTGCTCATTGGCATTTGTACAGGACTTGCTGCTGTTTTCATAAATATTGCTGTTGAAAATTTTGCTGGCTGGAAGTTCTCGGTGACATTTGATATAATTCAGAAATCATATATTGCTGGATTTGTTGTATATGTCCTGTTCAACTTGGTTTTGGTGTATTCCTCTGTATATATTATCACACAATTTGCACCAGCAGCCGCTGGATCTGGTATTCCTGAAATCAAAGGTTACTTAAATGGAGTTGATATTCGTGGGATCCTTCTTTTCAGAACTTTAATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGTGGAGGCCTTGCTTTGGGTAAAGAAGGTCCTCTTGTGCATACTGGTGCTTGTATTGCTTCCTTGCTCGGACAAGGTGGATCCACTAATTATCATATAAATTCAAGATGGTTTCAAGTATTCAAAAGCGACCGGGATCGCCGTGATCTTGTAACCTGTGGATGTGCAGCTGGAGTAGCTGCAGCATTTAGAGCTCCAGTTGGTGGTGTGCTGTTTGCTTTGGAAGAGGTTACATCTTGGTGGAGGAGTCAACTCATGTGGCGAGTCTTCTTCACTTCTGCTGTTGTGGCTGTTGTGGTCCGAGCTGCAATGGGGTGGTGCAAGAGTGGAAAATGTGGACACTTTGGTTCTGGTGGATTCATAATATGGGATATATCAGAGTTAAGATCTAAGCTATCACTTTTTTGACTGTCAGTTGAAAATTCAGATATATGTTTTCTTCCTTCCTCTTGACTGATTTTATTTTTAGTGGCCAAGAGGATTATTCCTTTGCAGAGTTATTTCCAATGGCTATTATTGGGGTTATTGGAGGTCTACTGGGAGCTTTATTCAACCAGCTTACACTTTATATTACAACCTGGCGAAGGAATCATCTTCACAAGAAAGGGAACAGGGTCAAGATTATTGAAGCATGTCTTGTATCCATTTTAACATCAGCCGTTTCATTTGGCTTGCCACTTCTTAGACAATGTAGTCCTTGTCCTGATTCTGACCCTGCATCTGGTATTGAATGTCCACGACCTCCTGGAATGTATGGGAATTATGTAAATTTTTTTTGTAGCAAAGACAATGAATACAATGATCTTGCAACTATTTTCTTCAATACACAGGATGATGCCATAAGGAATTTATTCAGTGCAAAAACAATAAATGAGTACAGTTCCCAAAGTTTATTAACCTTTTTGGTTATGTTTTATGCTTTAGCAGTGATAACATTTGGTACTGCTGTGCCTGCTGGTCAATTTGTTCCTGGTATAATGATAGGATCAACATATGGTCGACTTGTTGGCATGTTCGTCGTAAAATATTACAGAAAGCTCAACATTGAAGAGGGAACTTATGCTTTGCTGGGAGCTGCATCTTTTCTTGGAGGCTCAATGCGGATGACAGTGTCACTATGTGTCATTATGGTTGAAATCTCTAATAACTTGAAATTTTTGCCGCTTATCATGCTTGTTCTTCTTATATCAAAGGCTGTTGGTGATGCTTTTAACGAAGGTATCTATGAAGAGCAAGCACAATTGAGGGGTATTCCTTTACTGGAATCCAGGCCTAAATATGAGATGCGCAATATGACAGCAAAGGAAGCCTGTGGGAGTGGAAGGGTGGTCTCTTTCCCTCGTGTTGTTAAGGTTTCAGATGTAGTTTCCATTCTGCGGAGCAACAAACACAATGGTTATCCAGTGATTGATCACACAAGAAGTGGAGAACCACTTGTTATTGGATTAGTGCTTCGGAGTCATTTATTGGTAATTCTGCAGTCAAAGGTCGACCTCCAGCATAGCCCTTTACCCTCAGATCCCAGAGGTGGGAGCAGATCAATTAGGCATGATTCTGGGGAATTTGCAAAGCCTGTTTCTAGTAAAGGAATATGTATTGAGGATATACATCTAAGTTCAGATGACTTAGAAATGTATATCGATCTTATCCCATTTTTGAATCCCTCACCATATATTGTACCAGAAGATATGTCCTTGACAAAGGTGTACAATCTTTTCCGTCAACTTGGTCTCAGGCATTTATTTGTTGTTCCTCGTCCATCTCGTGTGCTTGGTTTAATAACAAGAAAAGATTTGTTGATTGAGGACAAGGAAAATGTGAATACGTTAGAGCTTCAGTCAACTAGAGTAAGACTTCCGCATCAGAATAAAAGATTGACGACAAGGAACACAGATGTGGAGCGCCCTCTGCTAAGCGGACTGCTTCAAAATCAGATGCCTGACTGACACCCTGTAACTTACTCCAAGTACTCTCTGCATTCAGATTTCCTTGAACATCATTCTTTATTATTTCTTGTATCCTTGTTCAAATAGGTTAGGAAAACCAATATTTAGGAATGGGGTTATAGACAACATGCCCCTAGAATTTTGTATATTAGCTACCAGGGAAAGGAAGAATTCATTATAATGATTAATAGAATAGAGCCTGA 2964 0.417 MFSSFLLTDFIFSGQEDYSFAELFPMAIIGVIGGLLGALFNQLTLYITTWRRNHLHKKGNRVKIIEACLVSILTSAVSFGLPLLRQCSPCPDSDPASGIECPRPPGMYGNYVNFFCSKDNEYNDLATIFFNTQDDAIRNLFSAKTINEYSSQSLLTFLVMFYALAVITFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYRKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLISKAVGDAFNEGIYEEQAQLRGIPLLESRPKYEMRNMTAKEACGSGRVVSFPRVVKVSDVVSILRSNKHNGYPVIDHTRSGEPLVIGLVLRSHLLVILQSKVDLQHSPLPSDPRGGSRSIRHDSGEFAKPVSSKGICIEDIHLSSDDLEMYIDLIPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEDKENVNTLELQSTRVRLPHQNKRLTTRNTDVERPLLSGLLQNQMPD 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01038 504 PRINTS Chloride channel signature 226 245 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste1g01038 504 PRINTS Chloride channel signature 173 193 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste1g01038 504 PRINTS Chloride channel signature 208 224 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste1g01038 504 PRINTS Chloride channel signature 264 278 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste1g01038 504 FunFam Chloride channel protein 401 492 - -
Pste1g01038 504 Pfam CBS domain 306 349 IPR000644 -
Pste1g01038 504 Pfam CBS domain 409 457 IPR000644 -
Pste1g01038 504 SUPERFAMILY CBS-domain pair 282 456 IPR046342 -
Pste1g01038 504 SMART cbs_1 412 460 IPR000644 -
Pste1g01038 504 SMART cbs_1 298 350 IPR000644 -
Pste1g01038 504 Gene3D - 298 462 IPR046342 -
Pste1g01038 504 Gene3D Clc chloride channel 1 278 - -
Pste1g01038 504 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 10 461 - -
Pste1g01038 504 ProSiteProfiles CBS domain profile. 288 355 IPR000644 -
Pste1g01038 504 CDD CBS_pair_voltage-gated_CLC_euk_bac 299 456 - -
Pste1g01038 504 SUPERFAMILY Clc chloride channel 10 279 IPR014743 -
Pste1g01038 504 ProSiteProfiles CBS domain profile. 409 466 IPR000644 -
Pste1g01038 504 Pfam Voltage gated chloride channel 10 257 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pste1g01038 504 MobiDBLite consensus disorder prediction 358 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01038 Pste-Chr1 3334660 3345936 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01038 14 474 Ion Channels AT5G26240 83.080 0.0 787