Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g01009 ATGCTTCAAAGCTTGCTACCGCGATCCCCATCTCCTCGCACTCACAACACTAGAGCCATGAAAACCAAGCGAACTGTTGACGCCGACGACGACCAGCCTTCCTTAAAGCGAACCAACTTCTCAGGGGAGCCCGAGGCACAGGCCCAGGCCCAGGCCCATCCCGAGTCCAGCGGGCTCAAACTCCTCGGGCTCCTCCTCCAATGCGCGGAGTGCGTGGCCATGGACAACCTGGACTTCGCGAACGACCTCCTCCCGGAGATCGCGGAACTGTCGTCGCCGTTCGGGAGCTCGCCGGAGCGCGTGGGAGCGTACTTCGCGCAGGCGCTGCAGGCGCGCGTGGTGAGCTCGTGCCTGGGGTCGTACTCTCCGCTGACAGCGAAGTCGGTAACCGTAATTCAGTCGCAGCGAATCTTCAACGCTTTCCAATCGTACAACTCGGTGTCGCCGCTGGTGAAGTTCTCGCACTTCACGGCGAACCAGGCGATCTTCCAGGCGGTGGAGGGCGAGGATCGGGTGCACATAATAGACCTGGACATCATGCAAGGCCTCCAATGGCCAGGATTGTTCCACATCCTGGCATCTAGGTCGAAAAAGATCCGGTCCATAAGAATAACGGGATTCGGATCGTCGTCGGAGCTGCTGGAGTCGACGGGGAGGAGGCTGGCGGATTTCGCGACGTCGCTGGGGCTTCCGTTCGAGTTCTTCCCTGTGGAAGGGAAAATCGGAAGCGTGAGGGAAGTGAGTGAGTTGGGCGTTGGAGCAAACGAGGCCATCGTGGTCCACTGGATGCATCACTGTTTATACGACATAACCGGGAGCGATTTAGGGACCTTGAGATTGCTGACCCAGCTTAGGCCGAAACTGATAACAACCGTTGAGCAGGATCTTAGCCACGGTGGGAGCTTCCTCGCCCGTTTCGTTGAGGCCTTGCATTATTACAGCGCCTTGTTCGACGCCCTCGGTGATGGTTTAGGTGCGGACAGCATTGAGAGGCACACGGTGGAGCAGCAGCTTTTGGGTTGCGAGATCAGGAACATCGTGGCCGTTGGTGGGCCCAAGAGGACCGGTGAGGTTAAGGTTGAGCGCTGGGGTGATGAGTTGAAGCGTGCCGGCTTTGTTCCCGTTTCCCTCCGTGGCAACCCTGCCGCTCAAGCCAGTCTTTTGCTTGGCATGTTCCCTTGGAAAGGCTACACTCTCGTCGAGGACAATGGTTCCCTCAAGCTTGGTTGGAAGGATCTCTCTCTTTTGATCGCCTCCGCTTGGCACCCCTCTCCCTCCCATTAA 1284 0.5833 MLQSLLPRSPSPRTHNTRAMKTKRTVDADDDQPSLKRTNFSGEPEAQAQAQAHPESSGLKLLGLLLQCAECVAMDNLDFANDLLPEIAELSSPFGSSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTVIQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQAVEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSIRITGFGSSSELLESTGRRLADFATSLGLPFEFFPVEGKIGSVREVSELGVGANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHGGSFLARFVEALHYYSALFDALGDGLGADSIERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWGDELKRAGFVPVSLRGNPAAQASLLLGMFPWKGYTLVEDNGSLKLGWKDLSLLIASAWHPSPSH 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g01009 427 MobiDBLite consensus disorder prediction 1 53 - -
Pste1g01009 427 MobiDBLite consensus disorder prediction 37 53 - -
Pste1g01009 427 ProSiteProfiles GRAS family profile. 52 422 IPR005202 -
Pste1g01009 427 MobiDBLite consensus disorder prediction 1 16 - -
Pste1g01009 427 MobiDBLite consensus disorder prediction 20 36 - -
Pste1g01009 427 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 57 417 IPR005202 -
Pste1g01009 427 Pfam GRAS domain family 63 421 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g01009 Pste-Chr1 3220573 3221856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g01009 20 425 GRAS Transcription Factor Family AT5G41920 65.865 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pste1g01009 GRAS 1.3e-111 CL0063