Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00995 GCGTAAACGAAATAGAGGAAGGGGATTCCGGTACCTATCATTGAAGAGATAGAGCAGCGAGGAGAAGTTAATGAAACAAAAGGAAAGGTGAGGGTCTCCCGCCAGTAGAAGCAGAAGAGATGGAGCAAACGGTGTCACTGATTGGTGCTCTCAACCTCGTTTCCCGCAATCTCCCTCTTCCCCCCGACCTTCTCCACACCGTTTCTTCTATCTATCACCGATCTAACCCTAACAATTCTTCTTCCTCGCACGATGCACCCGAAGAAGATTTACTCACCGACCTTCAAGATGCGCTGTTGGAGCAGCGTCCGAACTGCACCTCCGCTTCCAAATTGAACAAAACTAGGGAAAGTCGTTATCAATTACCTTCAAGCAGGGGAGAGGACCTACAGGCTAGATGTCTGCTTGAGTTTTATGGACTGAAGCCTGTGGTAGGACCATTTTTCTGGCAGCTAGATGAGTTGCAGAGGAAGGTGCGGACTGATGTGAGTTCTGAATACTGGCTCAATATTAAATGTGCATATCCTGACAGGCAATTGTTTGATTGGAGCATGATGCGGTTGCGTCGTCCTCTATACGGTGTTGGCGATCCATTTGCCATGGATGCCGATGATCAAATAAGGAAGAAACGGGATGCTGAGAGACTATCAAGATTGGAAGAGCAGGCAAAAAATCATGTGGAGACCAGAAAAAGAAGATTTTTTGCAGAAATACTCAATACTGTCCGGGAGTTTCAATTACAAATTCAAGCTTCTTTGAAGCGTAGAAAACAGAGGAATGACGGTGTCCAGGCATGGCATGGCAGGCAAAGACAACGAGCAACACGGGCAGAGAAATTGAGATTCCAAGCCTTAAAGGCTGATGATCAGGAAGCTTATATGAGAATGGTAAAGGAGAGTAAGAATGAAAGATTGACTTTACTTCTAGAAGAAACAAATAAACTACTTGTAAATTTGGGAGCAGCTGTTCAACGTCAAAGGGACTCAAGACAATCGGATGGTATTGAACCTTTAGAAGATTCAGAAACTGATTTACCTGATGGATCGAAGAACGGAATTTCTAAGGAATCACCTCCTGAGGAAGATGTGGATTTGATAGATTCTGATCTTAATGGTGGTGACACTAGTGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTAACTGAGCAGCCATCTATTCTTCAAGGTGGAGAATTAAGGCCATACCAGCTGGAAGGCCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATATTGGCTGATGAAATGGGACTTGGGAAGACCATACAAACCATCTCATTGATAGCATATCTTATGGAATACAAGGGTGTGGCTGGTCCTCATTTGATTGTGGCTCCAAAGGCTGTTTTGCCAAATTGGATCAGTGAATTCTCAACATGGGTTCCAAGCATCATCACTGTTCTTTATGATGGACGCTTGGATGAAAGGAAAGCTATGAAGGAGGAACTGTCAGGGGAGGGAAAATTTAATGTTCTGATAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTTAAGAAAATTCATTGGCACTACTTGATTGTGGATGAAGGGCATCGATTGAAGAATCATGAGTGTGCTCTAGCAAGAACCCTGGACTCTGGCTATCACATTCAACGAAGACTTCTTTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAGTTATGGTCGCTACTCAATTTTCTCCTTCCAAATATTTTCAATTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCTTTTGCAGACCGAGTTGATGTCTCTCTAACGGATGAAGAACAGTTATTGATCATCCGGCGTCTGCATCAGGTGATAAGGCCCTTCATATTGAGAAGGAAAAAGGATGAGGTGGAAAAATTTCTTCCTAGCAAATCTCAGGTCATACTCAAATGTGACCTGTCAGCCTGGCAGAAAGTATATTATCAACAAGTCACTGATGTCGGCAGAGTTGGCTTAGACAATGGTTCTGGAAAATCAAAAAGTCTACAGAACTTGACAATGCAACTCAGAAAATGTTGTAACCATCCGTACCTCTTTGTGGGTGACTATGATATCTATAAACACAAGGAGGAGATTGTCAGAGCATCAGGAAAGTTTGAACTTCTTGACCGCTTGCTTCCTAAACTTCGTAGAGCTGGTCACAGAGTCCTCCTTTTTTCACAGATGACTCGTCTCATGGACATTCTTGAAATTTATCTGCGACTTCATGATTTTAAATTTCTTAGACTTGACGGCTCAACAAAAACTGAGGAAAGAGGTTCCCTACTACGGAAATTCAATGCACATGATTCTCCGTACTTTATGTTTCTCTTGAGTACCCGTGCTGGAGGTCTTGGTTTGAACTTACAGACAGCAGATACTGTCATAATCTTTGACAGCGATTGGAACCCACAAATGGATCAACAAGCTGAGGATCGAGCCCATCGCATTGGACAGAAAAAGGAAGTTAGAGTTTTTGTGTTAGTAAGCGTAGGATCAGTTGAAGAGGTGATTTTAGAGCGTGCTAAACAAAAGATGGGCATTGATGCCAAAGTTATTCAGGCTGGGCTTTTTAACACAACTTCTACAGCACAGGACAGAAGAGAAATGTTGGAGGAGATTATGCGTAGAGGTACTAGCTCACTTGGTACAGATGTGCCGAGTGAGAGAGAAATTAACCGTCTTGCAGCTCGATCTGATGAGGAGTTTTGGTTGTTTGAGAAAATGGATGAAGAACGAAGGCAAAAGGAGAATTACAGATCTCGACTCATGGAAGAGCATGAACTGCCAGATTGGGTATACTCTCCACTAAATAAGGATGATAAGGTTAAATTTTTTGACATCGGTAGTGTTACCGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGACACATTAAGTGATCTACAATGGATGAAGGCTGTGGAGAACGGACAGGACATATCTAAGCTTTCAGTCAAAGGGAAAAGAAGAGACCACGTCCCTGTTAACAACCATGCACAAGCTAGTGATGACATGGGGACAGAAGAACGGCTACTGGAGTTAAGAAATGAGAGATCAAGTGAAGACACTTTTGAGGCAATTCCTGCCTCTAAGAGACTCAAGTCTGAAGAAATAAATTCCCAGAAACATGAAAACGAGGGCGTCAGAGTTGGTGGTTTGAATGACCATATATTTTCCTGGAATACTCACAGAAAGAAGAGATCAACCTATCCTGGCCAGGGTTTGTTCTCTGACAGTAGAGGGGAGAATCCAAATGGAAGAACGAACTGGAACTGATAGTTCTAATATAATCAAGGATGCCAGAAATTTTCCCAACATTGGAATTGTGGTTCTGCTTAAGTTGTGTTTGTCAAAGAGTAGATGGTAGATTGCACTTTTCTGCAAATGAAGATACCAGCAAATTCTTTCTGGCAGCTGTAACGTTTATCAGTTGTATTAATGTAACATATCATCTAATTGATGAAAAACACGTTGCCCCTAGTTCATTTCATTGTTTCCCATCTGGATAGTTAAGCAATGGAATTCCAC 3572 0.4205 MEQTVSLIGALNLVSRNLPLPPDLLHTVSSIYHRSNPNNSSSSHDAPEEDLLTDLQDALLEQRPNCTSASKLNKTRESRYQLPSSRGEDLQARCLLEFYGLKPVVGPFFWQLDELQRKVRTDVSSEYWLNIKCAYPDRQLFDWSMMRLRRPLYGVGDPFAMDADDQIRKKRDAERLSRLEEQAKNHVETRKRRFFAEILNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQRDSRQSDGIEPLEDSETDLPDGSKNGISKESPPEEDVDLIDSDLNGGDTSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEYKGVAGPHLIVAPKAVLPNWISEFSTWVPSIITVLYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIHWHYLIVDEGHRLKNHECALARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPSKSQVILKCDLSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDIYKHKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGSLLRKFNAHDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPLNKDDKVKFFDIGSVTGKRKRKEVVYADTLSDLQWMKAVENGQDISKLSVKGKRRDHVPVNNHAQASDDMGTEERLLELRNERSSEDTFEAIPASKRLKSEEINSQKHENEGVRVGGLNDHIFSWNTHRKKRSTYPGQGLFSDSRGENPNGRTNWN 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00995 1066 SMART SnAC_2 885 946 IPR029295 GO:0042393
Pste1g00995 1066 Pfam Helicase conserved C-terminal domain 679 792 IPR001650 -
Pste1g00995 1066 SMART ultradead3 364 557 IPR014001 -
Pste1g00995 1066 FunFam Chromatin structure-remodeling complex protein SYD 359 602 - -
Pste1g00995 1066 Gene3D - 599 899 IPR027417 -
Pste1g00995 1066 Pfam SNF2-related domain 371 659 IPR000330 GO:0005524|GO:0140658
Pste1g00995 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 344 593 IPR027417 -
Pste1g00995 1066 FunFam Probable ATP-dependent DNA helicase CHR12 599 898 - -
Pste1g00995 1066 CDD SF2_C_SNF 670 803 - -
Pste1g00995 1066 Coils Coil 883 903 - -
Pste1g00995 1066 SMART helicmild6 708 792 IPR001650 -
Pste1g00995 1066 MobiDBLite consensus disorder prediction 286 338 - -
Pste1g00995 1066 MobiDBLite consensus disorder prediction 1039 1066 - -
Pste1g00995 1066 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 682 849 IPR001650 -
Pste1g00995 1066 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 380 546 IPR014001 -
Pste1g00995 1066 Coils Coil 169 189 - -
Pste1g00995 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 595 846 IPR027417 -
Pste1g00995 1066 Gene3D - 337 592 IPR038718 -
Pste1g00995 1066 PANTHER SNF2/RAD54 HELICASE FAMILY 161 985 - -
Pste1g00995 1066 Pfam Snf2-ATP coupling, chromatin remodelling complex 886 946 IPR029295 GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00995 Pste-Chr1 3157896 3165694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00995 675 820 RAD5 or RAD16-like Gene Family AT5G43530 38.667 9.78e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste1g00995 SNF2_N 1.6e-68 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00995 1 3157896 3165694 Pste1g00995 1 3157896 3165694 ECH