Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00980 TTTTATGGCAAAGTAGATGAAGCAGAGCAAGCCATGCACGAAATTCAGAGAAAAACCCGAAAGAGAATCACCATCATAGCCTTGTCCTCAATAGTCCTCATTGGAGTTGTGTGTGCTGCTGTGTTTGGAACAGTTGCTCACAACAGCAACAACTCAAATGATGATGGAAACAATGCACCATTTCTTTCCAATTCAGTGAAGGCTGTTTGTGATGTGACACTTTACAAGGACTCATGTTATAGCAGCCTTGGTCCTCTTGTGCATTCGGGTGAGGTGAAACCTGAGAAGTTGTTCTTGTTGTCTATTGAAGTGGCCTTAAGGGAGGTTTCTAGGGCTGTTGAGTATTTCTCTGAGAAGGGTGTTTTCAGTGGCTTGAAGGTTGACAATAGAACCATGGAAGGGTTTAAGAACTGCAAGGATCTTTTGGGTCTTGCAGTTGATCATTTGAATAGCTCTTTTGCTTCTGGGGGGAAGATAGTTATTTTCCCTCAACTAATTTATTCCACAATTCATCCAAAAGAAGCATTATTGAATATTAGATCACTGTTTAAACCTTGTGGTGAAACAGGTACATACCAGCAAACTTGCATTGATGGCTTTGGAGATGCACAAGAAGCATTTAAGAACAGCATTGTAAACAATCTAAAAAATTCTACAGAATTCACCAGCAACAGTCTTGCCATTATTACATGGCTTAACAAGGCTGCAAGCACAGTAAACTTGAGGCGCTTGATGACTACTTTGCCACATCAAATAGAAGAACCAAAGTGGCTTCATTCTAAGGACCGGAAGCTTCTTCAAGCAGATGATTTGAAGAGGAAAGCTGATATTGTGGTAGCAAAAGATGGCAGTGGAAAATATAAAACAGTAACTGCTGCACTTAAACATGTCCCTGAGAAAAGTGACAAGAGGACTGTGATCTATGTGAAGAAGGGGGTTTACTATGAAAATGTGAGGGTAGAGCAGACCAAATGGAATGTCATGATCATTGGTGATGGTATGAACACCACAATTGTATCTGGAAGCCTTAACTTTATGGATGGCACCCCGACATTTTCAACTGCGACATTTGCTGTGTTTGGGAAGAATTTCATTGCTAGGGACATGGGATTTCGCAACACAGCTGGTCCACAGAAGCACCAAGCAGTGGCACTGATGACAAGTGCTGATCAAGCAGTTTATTATAGGTGTCAAATTGATGCATTTCAGGACTCTCTCTATGCTCATTCCAACCGCCAATTCTACAGAGAATGCAACATTTATGGCACAGTAGATTTCATTTTTGGCAATTCAGCAGTTGTCCTTCAAAACTGCAACATTTTTCCAAGGGTGCCTATGCAGGGTCAGCAGAACACCATAACAGCACAGGGCAAAACTGACCCCAACATGAACACTGGAATTTCAATTCAAAATTGCAACATTGCACCCCTTGGAGATCTAAGTTCTGTGAAAACATACCTTGGAAGACCCTGGAAGAATTACTCAACCACAGTGTTTATGCAATCCACATTTGGGAGTTTCATTAACCCAAATGGATGGTTACCATGGGTAGGAAACTCAGCACCAGATACCATATTTTATGCAGAATTTCAGAATGTTGGACCAGGTGCTTCAACAAAGAATAGAGTCAAGTGGAAGGGTTTGAAAACCATCACAACTAAACAAGCTAGCAAGTTCACTGTCAAGGGTTTCCTTTCAGGGGATAGATGGATTCCAGCTTCTGGTGCCCCTTTTAAATCTTCTATGTAA 1749 0.4134 FYGKVDEAEQAMHEIQRKTRKRITIIALSSIVLIGVVCAAVFGTVAHNSNNSNDDGNNAPFLSNSVKAVCDVTLYKDSCYSSLGPLVHSGEVKPEKLFLLSIEVALREVSRAVEYFSEKGVFSGLKVDNRTMEGFKNCKDLLGLAVDHLNSSFASGGKIVIFPQLIYSTIHPKEALLNIRSLFKPCGETGTYQQTCIDGFGDAQEAFKNSIVNNLKNSTEFTSNSLAIITWLNKAASTVNLRRLMTTLPHQIEEPKWLHSKDRKLLQADDLKRKADIVVAKDGSGKYKTVTAALKHVPEKSDKRTVIYVKKGVYYENVRVEQTKWNVMIIGDGMNTTIVSGSLNFMDGTPTFSTATFAVFGKNFIARDMGFRNTAGPQKHQAVALMTSADQAVYYRCQIDAFQDSLYAHSNRQFYRECNIYGTVDFIFGNSAVVLQNCNIFPRVPMQGQQNTITAQGKTDPNMNTGISIQNCNIAPLGDLSSVKTYLGRPWKNYSTTVFMQSTFGSFINPNGWLPWVGNSAPDTIFYAEFQNVGPGASTKNRVKWKGLKTITTKQASKFTVKGFLSGDRWIPASGAPFKSSM 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00980 582 FunFam Pectinesterase 270 582 - -
Pste1g00980 582 Pfam Plant invertase/pectin methylesterase inhibitor 65 228 IPR006501 GO:0004857
Pste1g00980 582 SUPERFAMILY Pectin lyase-like 274 578 IPR011050 -
Pste1g00980 582 Gene3D - 271 582 IPR012334 -
Pste1g00980 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 62 234 IPR035513 -
Pste1g00980 582 Pfam Pectinesterase 276 568 IPR000070 GO:0030599|GO:0042545
Pste1g00980 582 ProSitePatterns Pectinesterase signature 2. 420 429 IPR033131 -
Pste1g00980 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 232 IPR035513 -
Pste1g00980 582 CDD PMEI-like_3 68 234 - -
Pste1g00980 582 PANTHER PECTINESTERASE 33 572 - -
Pste1g00980 582 SMART PMEI_2 61 228 IPR006501 GO:0004857
Pste1g00980 582 NCBIfam pectinesterase inhibitor domain 49 232 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00980 Pste-Chr1 3094792 3098266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00980 2 582 Carbohydrate Esterase AT3G10710 56.068 0.0 661