Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pste1g00979 | CAGAGTGTGGGTAGTAGTGTTACCACGAATGGCTACTTTAGAATCAGCCCTGGCCCTGTTCGCTGTTCAACGGTTTTCCAATAACTACGGTTTCCCTGCCGCAAAACCACCACTGTCCATTAAACTTCACACTCCTTCCACCGCTCTTTTTTTCTCTTCTAACTCCTTCCAAACCAGAAGGGTCTGCTTCCAGTTATGCTCCGCTTTGCAAGAGTTACCCACAACTTCCCCCTCTATTCATTCTTCTGACAACATCAAGAAGCTCTACGTCGTTAACATTTCTTGGTCTCTGTCCGCCACTGACCTCAAGGACCTCTTTGCCCAATGCGGATCCGTAACCGACGTCGAGATAATAAAGAGCAAAGATGGGCGGAACAAGGGCTATGCCTTCGTTACTATGGCTTCTCGGGAAGAGGCTCAAGCTGCTATTGATAAATTTGACTCTTATGAATTATCAGGACGGATAATAAGGGTAGAGCTTGCAAAGAGGTTCAAGAAACCTTCTCCTCCTCCACCTCCTCCAGGACCTCGTACTGGAGAGACACGTCATGTAATTTATGCTTCCAACCTTGCATGGAAAGCAAGATCTACCCATCTTAGACAGTTCTTCACTGAAAATTTCAAAACTCCGGTTTCAGCTAGGGTTGTCTTTGACAGCCCTTCTGGACGATCAGCTGGGTACGGATTTGTTTCTTTTCATACTAAGGAGGATGCAGAGGCTGCCATTTCTACTGTGGATGGGAAGGAGTTAATGGGACGACCGCTTCGCCTAAAATTCAGTGAAAAGAAAGATAAAGAAGCAGGAAGTGATAAAGATGAAGACCAAGTTAAAGATTCTGAAAGTGAAGAAGTTGAAGACCAAGGTTCTGATGCTCAACCGGAAGAATCATAAATTTTAGATGTTCATTTATTGATCTTAGGTCTTGGTATGGGATTAAGAGGAAACCTCTACTAGCTGGAATTATACCTCATGTATAAAGAACTATGATGGATGAATTTTTGCTTTAACAATATTATTTTTCATTAAGGTCTAGTTTATTATCCCTTTAAAATGTGGGTGAAAATTTAAGACACTTTTTTTATACAATTCTTATAAATGTCGTCTCTCAATTTTTTCACTCCCATTTTTAAGGGTACTTAAGGGGTGATGAAATTTTAAAATCTTGTCAATTAAAATTTTTAAATAATGTATCGAGACTTAGTTTAATTCATTATATTGGAATGGTA | 1227 | 0.4034 | MATLESALALFAVQRFSNNYGFPAAKPPLSIKLHTPSTALFFSSNSFQTRRVCFQLCSALQELPTTSPSIHSSDNIKKLYVVNISWSLSATDLKDLFAQCGSVTDVEIIKSKDGRNKGYAFVTMASREEAQAAIDKFDSYELSGRIIRVELAKRFKKPSPPPPPPGPRTGETRHVIYASNLAWKARSTHLRQFFTENFKTPVSARVVFDSPSGRSAGYGFVSFHTKEDAEAAISTVDGKELMGRPLRLKFSEKKDKEAGSDKDEDQVKDSESEEVEDQGSDAQPEES | 287 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pste1g00979 | 287 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 176 | 247 | IPR000504 | GO:0003723 | |
Pste1g00979 | 287 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 79 | 147 | IPR000504 | GO:0003723 | |
Pste1g00979 | 287 | CDD | RRM_SF | 79 | 150 | - | - | |
Pste1g00979 | 287 | SUPERFAMILY | RNA-binding domain, RBD | 74 | 170 | IPR035979 | GO:0003676 | |
Pste1g00979 | 287 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 77 | 154 | IPR000504 | GO:0003723 | |
Pste1g00979 | 287 | Gene3D | - | 58 | 156 | IPR012677 | - | |
Pste1g00979 | 287 | Gene3D | - | 157 | 260 | IPR012677 | - | |
Pste1g00979 | 287 | PANTHER | OS02G0815200 PROTEIN | 74 | 254 | - | - | |
Pste1g00979 | 287 | SUPERFAMILY | RNA-binding domain, RBD | 156 | 256 | IPR035979 | GO:0003676 | |
Pste1g00979 | 287 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 174 | 253 | IPR000504 | GO:0003723 | |
Pste1g00979 | 287 | MobiDBLite | consensus disorder prediction | 244 | 266 | - | - | |
Pste1g00979 | 287 | SMART | rrm1_1 | 175 | 249 | IPR000504 | GO:0003723 | |
Pste1g00979 | 287 | SMART | rrm1_1 | 78 | 150 | IPR000504 | GO:0003723 | |
Pste1g00979 | 287 | MobiDBLite | consensus disorder prediction | 267 | 287 | - | - | |
Pste1g00979 | 287 | MobiDBLite | consensus disorder prediction | 244 | 287 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pste1g00979 | Pste-Chr1 | 3087991 | 3091157 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pste1g00979 | 79 | 262 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 25.806 | 1.36e-11 | 62.8 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pste1g00979 | 1 | 3087991 | 3091157 | Pste1g00979 | 1 | 3087991 | 3091157 | ECH |