Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00979 CAGAGTGTGGGTAGTAGTGTTACCACGAATGGCTACTTTAGAATCAGCCCTGGCCCTGTTCGCTGTTCAACGGTTTTCCAATAACTACGGTTTCCCTGCCGCAAAACCACCACTGTCCATTAAACTTCACACTCCTTCCACCGCTCTTTTTTTCTCTTCTAACTCCTTCCAAACCAGAAGGGTCTGCTTCCAGTTATGCTCCGCTTTGCAAGAGTTACCCACAACTTCCCCCTCTATTCATTCTTCTGACAACATCAAGAAGCTCTACGTCGTTAACATTTCTTGGTCTCTGTCCGCCACTGACCTCAAGGACCTCTTTGCCCAATGCGGATCCGTAACCGACGTCGAGATAATAAAGAGCAAAGATGGGCGGAACAAGGGCTATGCCTTCGTTACTATGGCTTCTCGGGAAGAGGCTCAAGCTGCTATTGATAAATTTGACTCTTATGAATTATCAGGACGGATAATAAGGGTAGAGCTTGCAAAGAGGTTCAAGAAACCTTCTCCTCCTCCACCTCCTCCAGGACCTCGTACTGGAGAGACACGTCATGTAATTTATGCTTCCAACCTTGCATGGAAAGCAAGATCTACCCATCTTAGACAGTTCTTCACTGAAAATTTCAAAACTCCGGTTTCAGCTAGGGTTGTCTTTGACAGCCCTTCTGGACGATCAGCTGGGTACGGATTTGTTTCTTTTCATACTAAGGAGGATGCAGAGGCTGCCATTTCTACTGTGGATGGGAAGGAGTTAATGGGACGACCGCTTCGCCTAAAATTCAGTGAAAAGAAAGATAAAGAAGCAGGAAGTGATAAAGATGAAGACCAAGTTAAAGATTCTGAAAGTGAAGAAGTTGAAGACCAAGGTTCTGATGCTCAACCGGAAGAATCATAAATTTTAGATGTTCATTTATTGATCTTAGGTCTTGGTATGGGATTAAGAGGAAACCTCTACTAGCTGGAATTATACCTCATGTATAAAGAACTATGATGGATGAATTTTTGCTTTAACAATATTATTTTTCATTAAGGTCTAGTTTATTATCCCTTTAAAATGTGGGTGAAAATTTAAGACACTTTTTTTATACAATTCTTATAAATGTCGTCTCTCAATTTTTTCACTCCCATTTTTAAGGGTACTTAAGGGGTGATGAAATTTTAAAATCTTGTCAATTAAAATTTTTAAATAATGTATCGAGACTTAGTTTAATTCATTATATTGGAATGGTA 1227 0.4034 MATLESALALFAVQRFSNNYGFPAAKPPLSIKLHTPSTALFFSSNSFQTRRVCFQLCSALQELPTTSPSIHSSDNIKKLYVVNISWSLSATDLKDLFAQCGSVTDVEIIKSKDGRNKGYAFVTMASREEAQAAIDKFDSYELSGRIIRVELAKRFKKPSPPPPPPGPRTGETRHVIYASNLAWKARSTHLRQFFTENFKTPVSARVVFDSPSGRSAGYGFVSFHTKEDAEAAISTVDGKELMGRPLRLKFSEKKDKEAGSDKDEDQVKDSESEEVEDQGSDAQPEES 287
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00979 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 247 IPR000504 GO:0003723
Pste1g00979 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 147 IPR000504 GO:0003723
Pste1g00979 287 CDD RRM_SF 79 150 - -
Pste1g00979 287 SUPERFAMILY RNA-binding domain, RBD 74 170 IPR035979 GO:0003676
Pste1g00979 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 154 IPR000504 GO:0003723
Pste1g00979 287 Gene3D - 58 156 IPR012677 -
Pste1g00979 287 Gene3D - 157 260 IPR012677 -
Pste1g00979 287 PANTHER OS02G0815200 PROTEIN 74 254 - -
Pste1g00979 287 SUPERFAMILY RNA-binding domain, RBD 156 256 IPR035979 GO:0003676
Pste1g00979 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 253 IPR000504 GO:0003723
Pste1g00979 287 MobiDBLite consensus disorder prediction 244 266 - -
Pste1g00979 287 SMART rrm1_1 175 249 IPR000504 GO:0003723
Pste1g00979 287 SMART rrm1_1 78 150 IPR000504 GO:0003723
Pste1g00979 287 MobiDBLite consensus disorder prediction 267 287 - -
Pste1g00979 287 MobiDBLite consensus disorder prediction 244 287 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pste1g00979 Pste-Chr1 3087991 3091157 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00979 79 262 Eukaryotic Initiation Factors Gene Family AT2G23350 25.806 1.36e-11 62.8
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00979 1 3087991 3091157 Pste1g00979 1 3087991 3091157 ECH