Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00978 ATGGCTTCTCTAGGCAACCCAAAAAGTTGGGTTCCATACATGAACAACAAAGACTGTTCTCAAGAATTTTGTAGCATGTATTGTCCACAGTGGTGTTATGTAATCTACCCTCCTCCTCCTCCCTTTGAATTTCCCGGTGATGATTCAAGTCCAAATTTCTCCCCTCTAGTTATTGCAGTCATTGGGGTCTTGGCCAGTGCTTTTCTTCTTGTGAGTTACTATACCATAATATCCAAGTACTGTGGCAGCAGAGAATCTGCAGAAATTGAAGATCAGGAAGAAAATGTTGAATTAGATGAGGACCATAATCCTTCACTCCACGAGCCTTGGCATGCCGCAACCATTGGTTTAGATGAGGCTTTGATAAAGTCCATTACAGTTTGCAAGTACAAGAAAGGTGATGGGCTGGTTGAGGTAACAGATTGCCCCGTTTGTCTCAGTGAGTTTCAAGATGATGAAAATGTTCGACTCTTACCTAAATGCAGCCATGCTTTTCATCTCCCTTGCATTGACACGTGGCTCAAATCTCACTCTAGTTGCCCTCTATGTCGAGCTAGCATATTCACCTTCAACGCTGCTGCACTTCATGCTGCTAACCCAGTCATGGAACTCTCTTCAAGTAATGAAAATTCTTCAGAAAACCAACATGCAGATGAAAACATTGCTGTTGCAAGGGACAGTGAATTGGATGCTGTGGAAGGAGAAGTCACACATGGTGGAGCAGTTTCAAAGACTGCATTTCGTGCTTTGAGTGATCTAGGAAATTTGAGGGGAAGGCATAGCGTAATTGAGATTAGAGATGAAGACTATGATTCCATTAGAAGGACATTTTCTATGGATCATTCGTTTCAAAGGGGTAGGGGTCTTTCAGTTGCAGATGTTCTGCAAGTGAATCAAGAGCATGAAGGATGTTCTAATGAAGCTGGTCCTTCAAAAGGATCAAGAGGTGAAAGTAGCAAGTCTAGCTATAAAAGAAGGGTTTTACATTGTGTTTTGAGTCCAATTGCAATGAAGAGATCATTTTCTAGTGGAAGGTTCTCCCTTAGCAGAAATGGCAGAGGAAGGCAATGGATTCTGCCTGTCTGA 1086 0.4236 MASLGNPKSWVPYMNNKDCSQEFCSMYCPQWCYVIYPPPPPFEFPGDDSSPNFSPLVIAVIGVLASAFLLVSYYTIISKYCGSRESAEIEDQEENVELDEDHNPSLHEPWHAATIGLDEALIKSITVCKYKKGDGLVEVTDCPVCLSEFQDDENVRLLPKCSHAFHLPCIDTWLKSHSSCPLCRASIFTFNAAALHAANPVMELSSSNENSSENQHADENIAVARDSELDAVEGEVTHGGAVSKTAFRALSDLGNLRGRHSVIEIRDEDYDSIRRTFSMDHSFQRGRGLSVADVLQVNQEHEGCSNEAGPSKGSRGESSKSSYKRRVLHCVLSPIAMKRSFSSGRFSLSRNGRGRQWILPV 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00978 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 191 IPR013083 -
Pste1g00978 361 FunFam RING-H2 finger protein ATL54 117 190 - -
Pste1g00978 361 CDD RING-H2_EL5-like 141 184 - -
Pste1g00978 361 MobiDBLite consensus disorder prediction 302 321 - -
Pste1g00978 361 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Pste1g00978 361 PANTHER RING-H2 FINGER PROTEIN ATL16 41 325 IPR044600 GO:0016567|GO:0016740
Pste1g00978 361 SMART ring_2 142 183 IPR001841 -
Pste1g00978 361 MobiDBLite consensus disorder prediction 302 317 - -
Pste1g00978 361 Pfam Ring finger domain 141 184 IPR001841 -
Pste1g00978 361 SUPERFAMILY RING/U-box 122 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00978 Pste-Chr1 3082829 3083914 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00978 1 302 C3H Transcription Factor Family AT3G03550 41.925 3.74e-68 216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00978 1 3082829 3083914 Pste1g00978 1 3082829 3083914 ECH
Pste1g00978 1 3082829 3083914 Pste7g00007 7 60263 61354 PCT