Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00974 GGGACGCCCAATAGCCGTTGCTCTCACAGCAACGTTCAAATTATTTGAATTGAATATTGAATTGGCAACGGCTATTACACCCTTTTAAGTCACAGCTTTTGCCATTCTTTCTTCACCAACAAAAACTCTCTTCTTCAGATCTCTCTTTTCTTTCTACAACATCAATATCATCAATATGGCTGCCAATACCATCAATGGGAACACTAACACTGAATCCGCTCAACCCAACATTGCTAAACACTCTCTCCCTCCTGCTAAAACTGTTGATTCTCAGTCCGTTCTCCGAAGGCTGCAATCTGAATTGATGGCTTTGATGATGAGTGGAGATTCTGGGATATCCGCATTTCCTGAAGAGGACAATATATTCTTCTGGAAAGGAACAATAACAGGAAGCAAAGATACAGTGTTTGAGGGCACAGAGTATAAGCTGACCCTCTCCTTTCCCAACGATTACCCTTTTCAGCCTCCAAAAGTCAAGTTTGAAACAACTTGCTTCCACCCCAACGTGGATGTGCATGGCAACATATGTCTGGACATACTCCAGGACAAATGGTCATCTGCCTATGATGTCAGAACAATTCTTCTATCCATCCAAAGTCTGCTTGGAGAACCAAACATCAGTTCACCACTAAATCCACAAGCAGCACAGCTTTGGAGTAATCAAGAAGAATACAGGAAGATGGTGGAGAAGTTGTACAAATCTGCAAATTGAAAGTTCCTGTCTGCTTCCTATGAAAGCCATAATATTTTTAGGCGTCCTTTTCTGATGGGCCTAAACTCTCACAACAATTATGAATCACCCCATGTTTCTTTCTCTTATTTGCAATTCAAAGTTTTGCTTTTCGGCGATTTGTGTACTTATTGTGTCATGTTTACTCCACAATTTTGCTTTGGGACGCCCTAATTCCACATATAAAATTTAATTTAATAAAAATGTTTCA 941 0.4017 MAANTINGNTNTESAQPNIAKHSLPPAKTVDSQSVLRRLQSELMALMMSGDSGISAFPEEDNIFFWKGTITGSKDTVFEGTEYKLTLSFPNDYPFQPPKVKFETTCFHPNVDVHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNPQAAQLWSNQEEYRKMVEKLYKSAN 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00974 178 CDD UBCc 37 174 IPR000608 -
Pste1g00974 178 FunFam ubiquitin-conjugating enzyme E2 20 28 176 - -
Pste1g00974 178 Pfam Ubiquitin-conjugating enzyme 38 172 IPR000608 -
Pste1g00974 178 MobiDBLite consensus disorder prediction 1 27 - -
Pste1g00974 178 Gene3D Ubiquitin Conjugating Enzyme 27 178 IPR016135 -
Pste1g00974 178 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 34 178 IPR000608 -
Pste1g00974 178 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 37 171 - -
Pste1g00974 178 SUPERFAMILY UBC-like 32 174 IPR016135 -
Pste1g00974 178 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 107 122 IPR023313 -
Pste1g00974 178 SMART ubc_7 37 178 - -
Pste1g00974 178 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00974 Pste-Chr1 3070591 3071934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00974 36 143 Miscellaneous Gene Families AT3G17000 30.973 2.57e-12 62.0