Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00972 ATGCAGACGAGCATCGATGTCATCTCAAAACTCAAAGCAGATAACTCGGAAAGGCAAACGCCTCCGCCCCCACCCCCACAAATCACCCCATCAACGCTAATATTTTTCACCATCGCGGTGCTTGTGTTCTGCTTCGTAGGTTTCTGCGTTCTCTTCTTCTGCAGGTGCTGTTTCGTCAACATCTCAAACTCAACCACCCTTGTTCATCTTTCTACCAATGCTTCTCCTTATAGAGGCCTCGACCTTTCTCTACTACAAGCCTTTCCCACCTTCCTCTACTCCACCGTCAAGGACCTTCGCAAGGAGAACAATTATTCCTTAGAATGCGCCATTTGCTTGTTGGAGTTCGACAATGATAGCATGCTGCGACTCTTAACCCTTTGCTACCATGTTTTCCATCAAGACTGTATCGACCTGTGGCTACGCTCCCACAAAACTTGCCCCGTTTGTCGCACTGATCTCGAGGCACCCACAAATAAGGACGTTGAACAAAACCAGGAGAATGTGGAGCCTGAGAGCATAGATCATGTTTGCATTGATGTAAAAGAAGGTGATGGAGATCACAGACATGTTGATGATGAGGGGGTTTCTTCATTGAGTGATGGCATGCAACAACACAAGTTTGCATTTGCACGTTCACACTCAACTGGCCATTCTATAGTTATGGTTAGAGGTGAAGGAAGAGAAGATGATGATGATAAATATACATTGAGATTGCAGGAACATGTATCGTTGGAAATTGTAAAGGGAGGCCATAACTACTCCAAGAGTTGTTCTGCTTCCAAAGATATGTCAAGATTTTCTGCGCCTTGCAGAAACTGTGGTTATCTTCCAACTCTATTTGACACTTCCTCCTCCAATAATGCTATAAAAAATAATATTTAA 885 0.4407 MQTSIDVISKLKADNSERQTPPPPPPQITPSTLIFFTIAVLVFCFVGFCVLFFCRCCFVNISNSTTLVHLSTNASPYRGLDLSLLQAFPTFLYSTVKDLRKENNYSLECAICLLEFDNDSMLRLLTLCYHVFHQDCIDLWLRSHKTCPVCRTDLEAPTNKDVEQNQENVEPESIDHVCIDVKEGDGDHRHVDDEGVSSLSDGMQQHKFAFARSHSTGHSIVMVRGEGREDDDDKYTLRLQEHVSLEIVKGGHNYSKSCSASKDMSRFSAPCRNCGYLPTLFDTSSSNNAIKNNI 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00972 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 158 IPR013083 -
Pste1g00972 294 SMART ring_2 109 150 IPR001841 -
Pste1g00972 294 Pfam Ring finger domain 108 151 IPR001841 -
Pste1g00972 294 SUPERFAMILY RING/U-box 96 157 - -
Pste1g00972 294 FunFam E3 ubiquitin-protein ligase ATL6 68 157 - -
Pste1g00972 294 PANTHER RING FINGER DOMAIN-CONTAINING 19 159 - -
Pste1g00972 294 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00972 Pste-Chr1 3066845 3067729 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00972 13 249 Rapid Response to Elicitors AT3G05200 37.354 2.90e-38 137
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00972 1 3066845 3067729 Pste7g00068 7 582907 585079 PCT