Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00969 TCAGTATGGCGTATCTCTCCCATTCCCTTCCTCTCTTCTCTCTCCCCTAAACCCTATTAATAACTTCCCTAGCCCACTGCTTTCTCCCATGCACTTGTCCTCTTCACTCTCTCAACCCTTTTCCATTTTTCATCTCCTCCCTTCCCTTCCTTTTTTATTTTACTACCTTCCCTTCTTCCTCTTAAATATTCATTCCCCTCCCCCCCTCCATACTCCATCTCTCTCTTCAACACTTTCTTTCTCCCCTCTCCCTCTCCCTCACACCCACCTTAACTCTTCTTCTCTCATCACTCCCCACAATTAATTAAAGAGGTGTCAACAACAACAACAACTACAACTACTTGAGTAGTAGAAGTAGTAGTTGCCAACAGCAAAACATTTCTGACACACACCACAAAGGGTAGTCGTTAAATTCTTCATTAATTAATTCATAATGTCTAGCAGAAGATCCCGTTCCAGACAATCCGGTGCTTCAGCTGAGATCACAGATGCTCAAATCACCGATCTTGTTTCTAAGTTACAACAACTTATCCCTGAGCTTCGCGCTAGGCGCTCCGACAAGGTTTCAGCGGCTAAGGTATTGCAGGAGACATGCAACTACATAAAAAACTTGCACAGAGAGGTTGATGATCTAAGTGACAGATTATCAGAGCTGTTGGCAAACACAGACTCCAACAGTGCTCAAGCGGCCATTATTAGGAGCTTACTTATGTAATAGTCTAGTCTAGTGCATTTATTTGTGTCGCGTGCATGTCCAAGTCTCTCTCACTTTTTTATTACTCTCTCTTCTGGGTAGGGTTTGGTTTGTACTTTGTAGACCACAACACAAAGGACTATTACCACCACCGGATCGATCCATGTGAATTAGTTCTTGATTAGTTTTTAATTATGTGCCACTTTGTAGTAATTAATTATCACCAGCTTCTACGGCTGTAAATAAAATGGACTACATGTTCATGTGTTCTAATCATTAGTATACTATGAAATGAAAC 992 0.4153 MSSRRSRSRQSGASAEITDAQITDLVSKLQQLIPELRARRSDKVSAAKVLQETCNYIKNLHREVDDLSDRLSELLANTDSNSAQAAIIRSLLM 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00969 93 FunFam Transcription factor ILI6 7 89 - -
Pste1g00969 93 CDD bHLH_AtPRE_like 17 77 - -
Pste1g00969 93 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Pste1g00969 93 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
Pste1g00969 93 Coils Coil 57 77 - -
Pste1g00969 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
Pste1g00969 93 Gene3D - 19 89 IPR036638 GO:0046983
Pste1g00969 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00969 Pste-Chr1 3052336 3053743 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00969 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 70.213 1.27e-36 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste1g00969 HLH 8.7e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00969 1 3052336 3053743 Pste1g00969 1 3052336 3053743 ECH
Pste1g00969 1 3052336 3053743 Pste5g00894 5 5783069 5784538 ECH