Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00955 CCCCCCTCTCTTTCCCTCTCCCTCCCAACTTCATTTTCCTTTCAAATAGTAACACTAGAGGACAAAAGCTTTAGCTATAACTGATCATGTATATACAAGCCATCATTCAGAACAATTAGTCCATCCTCTCTCAATTGAAGAACTTATTTAATTTACTCCTAAGATACTTGTCAGAGGATGTGGTGCAGTAATCCTTTGTCCTTCCTTCTTTAACCTTATAGCATTTGCACTCTTCTTTTATTCCTTCAAAGTGGCGATCACACTATTATTCAGCTGATCTTGAAGATTTTGTGGCAGGCCTAAAACCTGCAATGAGATGGCTTTCTTCCCAGCAAATTTCATGCTCCAAACACCTCACCATGATGATCATCAACCTCCAGCTTCGCTCACCTCTATTCTACCCACGTGCACACCTCAGGAATATCATGGGGGAGTGTCATTTCTAGGAAAGAGATCCATGTCATTTTCATCAGGAATTGAACATGGAGAAGAGGCCAATGCTGAGGAAGATTTATCTGATGATGGATCACAGGCAGGGGAGAAGAAGAGGAGGCTTAACATGGAACAGGTGAAGACACTTGAAAAGAGTTTTGAGTTAGGGAATAAGCTTGAGCCAGAGAGGAAAATGCAGCTTGCAAGAGCTCTTGGCTTGCAGCCAAGACAAATTGCCATATGGTTCCAAAACAGAAGGGCTAGGTGGAAAACCAAGCAGTTGGAAAAAGACTATGATCTCCTTAAAAGACAGTATGAAGCTGTTAAGTCAGATAATGATGCACTTCAGGCCCAGAACCAAAAACTTCAGGCTGAGATATTGGCACTGAAAAGTAGAGAGCCAACTGAATCCATCAACCTTAACAAAGAAACAGAAGGATCCTGCAGCAATAGAAGTGAGAACAGTTCAGACATCAAGTTGGATATTTCAAGGACACCAGCAATTGACAGTCCTCTATCTACACATCAGCCAAGCAGACCCCTCTTTCCATCTTCTGCAAGGCCTGCAGGAGTTGCTCAGCTTTTCCAAACTTCTTCAAGACCTGACCTTCCATGCCAAAAGATTGACCAAATGGTCAAAGAAGAAAGCTTAAGCAACATGTTCTGTGGCATGGATGATCAATCCGGGTTTTGGCCATGGTTGGAGCAGCAGCATTTCAATTGAATCAAATGGAGAGTTAATTAATTTAAAAATTTGAATGTAGTTTTTCCCTGTGAAATCAAGAGGGTGTCCATCAATCAATTACCATACTTTATTATGAGTTCTTAAATTAAACCCATGTTTTGGAAACTTGGTGTATAAAATAGGTTATATCAAGTAGAAATTTTCTGGCGGGGCTTGAAAATTTTTATATGAATGAATAAAGAGCTAGTCACTTTTTTCCCCCTAAGTTGGTTAATGTAACATGTTTTGTTGAAACTTTGAGTAATGTTATTTGGTTGAGTTAATTAATGGGGAATGAGAAAGTAAAAC 1465 0.3993 MAFFPANFMLQTPHHDDHQPPASLTSILPTCTPQEYHGGVSFLGKRSMSFSSGIEHGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKSDNDALQAQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPLSTHQPSRPLFPSSARPAGVAQLFQTSSRPDLPCQKIDQMVKEESLSNMFCGMDDQSGFWPWLEQQHFN 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00955 279 PRINTS Lambda-repressor HTH signature 111 127 IPR000047 GO:0003677
Pste1g00955 279 PRINTS Lambda-repressor HTH signature 102 111 IPR000047 GO:0003677
Pste1g00955 279 CDD homeodomain 76 132 IPR001356 GO:0003677
Pste1g00955 279 SUPERFAMILY Homeodomain-like 66 133 IPR009057 -
Pste1g00955 279 FunFam Homeobox-leucine zipper protein ATHB-13 68 135 - -
Pste1g00955 279 Gene3D - 68 137 - -
Pste1g00955 279 MobiDBLite consensus disorder prediction 179 199 - -
Pste1g00955 279 Pfam Homeobox associated leucine zipper 131 171 IPR003106 GO:0006355|GO:0043565
Pste1g00955 279 MobiDBLite consensus disorder prediction 176 199 - -
Pste1g00955 279 ProSitePatterns 'Homeobox' domain signature. 106 129 IPR017970 GO:0000981|GO:0006355
Pste1g00955 279 SMART HOX_1 74 135 IPR001356 GO:0003677
Pste1g00955 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 53 207 IPR045224 GO:0003700
Pste1g00955 279 MobiDBLite consensus disorder prediction 54 82 - -
Pste1g00955 279 Pfam Homeodomain 76 129 IPR001356 GO:0003677
Pste1g00955 279 Coils Coil 123 171 - -
Pste1g00955 279 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00955 Pste-Chr1 2994568 2996722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00955 1 279 Homeobox Transcription Factor Family AT1G69780 64.865 9.19e-122 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste1g00955 Homeodomain 1.4e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00955 1 2994568 2996722 Pste7g00848 7 7889818 7891475 PCT