Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00949 ATGTTTGACGCCAACATGTTTGATCACCCTCACATGGCTGTGTGTCCAGAGAATGATTTGGGAAAGGCTAAAGATGATGAATATGAGAGCAAATCTGTGACTGAAATCATGGAGGCTCCTTCTGGGGACGACCAAGATCCCAACCCTCGACCTAAAAAGAAGGGTTATCGCCGCCACACACAGCACCAAATAGAAGAAATGCAAGCCTTCTTCAAGCAGTGTCCTCACCCTGATGATAAGCAAAGAAAAGAGCTTAGCCATGAACTGGGGTTGGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAGCGCACCCAGATGAAGACTCAACATGAACGGCATGAGAATGCTATATTGAAGGCTGAGAATGAAAAGCTTCGCGCTGAGAACAGCAGGTACAAGGAGGCCCTAACCAATGCTACATGCCCCCACTGTGGTGGCCCAGCTGCTCTTGGAGAAATGTCGTTCGACGAGCAACACTTGAGGATTGAGAATGCTAGGCTAAGAGAAGAGATTGATAGGATTTCAGGAATTGCGGCCAAATATGTTGGAAAGTCTGTGACTTCTTCGTACTCCAACCTTTCATCTCTTAATACCAACCACGCGGGTGTTGGTAACTATGGATCACAGTCAGGGATAGTAGGAGAAATGTATGGAGGCAAGGACCTTTGTAGGTCACTCCCAGCTCCAGCTGATGCTGACAAACCCATGATTGTGGAGCTTGCTGTTGCTGCAATGGAGGAACTCACAAGATTAGCTCAGGCAGGAGACCCTTTATGGGTTACCAACAACCATCATTCTGAGATTCTAAATGAGGATGAATACTTGAGGACTTTCCCTACCAGAGGCTTAGGTCCCAAACCCTTGGCCTTGAAATCTGAATCTTCAAGGGAATCTGTGGTGGTCATCATGAATCACATTAACCTTATTGATATCCTTATGGATGTGAACCAATGGTCGACTGTGTTTTGTGGTATTGTCTCGCGAGCATTGACCCTTGAAGTCCTGTCGACTGGAGTAGCAGGAAACTACAATGGAGCCTTGCAAGTGATGTCAGCTGAGTTCCAAGTTCCTTCACCACTTGTTCCCACTCGTGAGAACTATTTTGGAAGGTACTGTAAGCAGCAACCAGATGGGATATGGGCAGTGGTCACATGGATCGAGCATGTAGAAGTGGATGATAGAACAGTGCATAGCATATATAGACCATTGGTTAATTCCGGGCTCGCCTTTGGAGCTAAACGGTGGGTGGCTACATTAGACAGACAATGCGAACGTCTTGCCAGTTCATTGGCCAACAACATACCAGCAGGGGACCTATGTGTGATAACGAGTGGTGAGGGAAGGAAAGGTATGCTGAAGCTGGCGGAGAGAATGGTGATGAGCTATTGCACTGGTGTTGGTGCTTCTACTGCACATGCTTGGACAATGCTATCTGCAACTGGATGTGATGATGTAAGGGTGATGACAAGAAAGAGCACAGACGAACCTGGCAGGCCCCCCGGCATAGTGCTCTGTGCTGCCACTTCTTTCTGGCTCCCAGTTCCTCCAAAGAGAGTTTTTGATTTCCTACGTGATGAAAACTCAAGAAACGAGTGGGACATTCTCTCCAACGGGGGTCTTGTTCAAGAATTGGCACACATAGCAAATGGTCGTGATCCTGGAAACTGTGTCTCTTTACTTCGAGTGAATAGTACAAATTCAAGCCAAACTAATATGCTCATACTTCAAGAGAGTTGCACGGATTCTACTGGCTCATATGTAGTATATGCTCCTGTGGATATAGTTGCTATGAATGTTGTCTTGAGTGGAGGAGACCCAGATTATGTTGCTCTACTGCCCTCAGGCTTTGCTATTCTTCCTGATGGGCCTGGATTAAATGGGGGGCCTATAATTGATGTGGGATCTGGAGGTTCTTTATTAACTGTTGCATTCCAGATCTTAGTTGATTCAGCCCCAACAGCAAAGCTTTCTTTGGGTTCAGTGGCCACTGTCAACAGTTTAATTAAGTGCACAGTTGAAAGGATCAAAGTTGCAGTAATACGCGACAACAACTGA 2058 0.4631 MFDANMFDHPHMAVCPENDLGKAKDDEYESKSVTEIMEAPSGDDQDPNPRPKKKGYRRHTQHQIEEMQAFFKQCPHPDDKQRKELSHELGLEPLQVKFWFQNKRTQMKTQHERHENAILKAENEKLRAENSRYKEALTNATCPHCGGPAALGEMSFDEQHLRIENARLREEIDRISGIAAKYVGKSVTSSYSNLSSLNTNHAGVGNYGSQSGIVGEMYGGKDLCRSLPAPADADKPMIVELAVAAMEELTRLAQAGDPLWVTNNHHSEILNEDEYLRTFPTRGLGPKPLALKSESSRESVVVIMNHINLIDILMDVNQWSTVFCGIVSRALTLEVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRENYFGRYCKQQPDGIWAVVTWIEHVEVDDRTVHSIYRPLVNSGLAFGAKRWVATLDRQCERLASSLANNIPAGDLCVITSGEGRKGMLKLAERMVMSYCTGVGASTAHAWTMLSATGCDDVRVMTRKSTDEPGRPPGIVLCAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGLVQELAHIANGRDPGNCVSLLRVNSTNSSQTNMLILQESCTDSTGSYVVYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDGPGLNGGPIIDVGSGGSLLTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIKVAVIRDNN 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00949 685 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
Pste1g00949 685 Pfam Homeodomain 53 108 IPR001356 GO:0003677
Pste1g00949 685 SUPERFAMILY Bet v1-like 232 428 - -
Pste1g00949 685 SUPERFAMILY Homeodomain-like 38 110 IPR009057 -
Pste1g00949 685 SMART START_1 240 426 IPR002913 GO:0008289
Pste1g00949 685 SUPERFAMILY Bet v1-like 447 676 - -
Pste1g00949 685 ProSiteProfiles START domain profile. 385 429 IPR002913 GO:0008289
Pste1g00949 685 Coils Coil 104 139 - -
Pste1g00949 685 ProSiteProfiles START domain profile. 231 384 IPR002913 GO:0008289
Pste1g00949 685 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 52 384 IPR042160 -
Pste1g00949 685 FunFam Homeobox-leucine zipper protein HDG1 41 126 - -
Pste1g00949 685 Pfam START domain 241 384 IPR002913 GO:0008289
Pste1g00949 685 Gene3D - 40 126 - -
Pste1g00949 685 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Pste1g00949 685 CDD START_ArGLABRA2_like 235 425 - -
Pste1g00949 685 SMART HOX_1 52 114 IPR001356 GO:0003677
Pste1g00949 685 MobiDBLite consensus disorder prediction 1 60 - -
Pste1g00949 685 CDD homeodomain 53 111 IPR001356 GO:0003677
Pste1g00949 685 MobiDBLite consensus disorder prediction 18 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00949 Pste-Chr1 2968674 2973081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00949 1 683 Homeobox Transcription Factor Family AT4G21750 70.696 0.0 1055
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste1g00949 START 3e-23 CL0209