Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00932 ATGGCTATGCAACAATCTCTGCTAGACAAGCCTAGAAAACCCATTTCCAAAGTTATATGTTTAGCCCTCTCTTCACTTGTTGTGCTAAGTTCATTTGCCTATATTGCTTCTTATTTCATCAAACCCACTTTCTTCGACCACTCTTCCTATAACGATGTTTGTGATCATGCACATGATACTACATCCTGTTTAGCACATGTTTCCGAAATAATAGCTCAAGATCCCAGCTTGACTGCCACAAAAGACAACAAATTCAACATGCTACACTCTTTTCTAGTGAAATCCACCTCACACATTGAGAGGGCAGTGAGTATAACCAATGCCACTAGACTTAAATTCAACGGTCCTGGGGAGGAAGTATCTTTGGATGAGTGTGTGGAGTTGATGAACTTGTCCAAAGAAAGAATTTGGAACTCATTGGTGGCTTTAAAAGAAAAGAGCACTGAGTCAATGCAAGATGCACACACATGGCTTAGCAGTGTGCTCACTAACTATCAAACTTTCTTAGATGATTTGCAAGGAAGACCTCATGAACTTTTGGAGGTTGAACTTCAAAATTTGATATCTAGAGCAAGAACCTCTTTAGCCATGCTTGTTGCTATTTTACCTCCAAAGGTTGAAAACATAATTGATAAGAATTTGAAAACAGTAAATGGGAATTTTCCCTCATGGGTGACAAGCAAGGACAGGAGGCTTTTGGAGTCTACAGCTAGAGACATCAAGGCCAATGTTGTGGTGGCTGACGATGGGACTGGCAATTTCAAGACTGTGAAGGAGGCTGTGGCATCTGTACCAAAAAATAGCAAGACAAGGTATGTTATTTATGTGAAAGCAGGATTATACAGAGAGATTGTTGAAATTAGCAGCAACAAGAGGAATGTGATGCTTGTGGGTGATGGTATGGAAGAAACCATAATCACGGGCGGATTAAACTACAAAGACATAAAAAACACCTTTAGAACTGCTACTGTTGACACTCTCTATACCCACACCAACAGACAATTCTACCGCGACTGCTTCATAAGAGGCACAGTTGATTTCATCTTCGGAGATGCAGCTGTTGTGTTCCAAAATTGCACGCTGGTGGCCCGAAGGCCTATGAAAAACCAACAAAACATGGTCACAGCACAAGGGCGCACAGACCAAAACCAAAACACAGGAACTTCGATTCAGCAATGTAACATAATACCAAGTACGGATCTTAAGCCTGTGATGAAATCCATTAGCAGTTTTCTGGGTCGTCCATGGAAGAAGTATTCTAGAACTGTTGTGATGCAATCCCTCATAAGCAACCATATTGACCCAAAAGGGTGGCATGAATGGGATGAGGAACACAAGGACTATTTGGAAACTTTGTATTATGGAGAGTTTCGTAATCGAGGACCAGGTGCTGGTACTGATCATAGAGTGAATTGGACTGGTTTTCATGTTCTCACATCTGATTGGGAAGCCAACAAGTTTACAGTGAAAGAACTGATCCAAGGTGATAAATGGTTGGGTAGCACTGGAGTGAACTACATTGAAGGCCTCCATGGCTAG 1539 0.4152 MAMQQSLLDKPRKPISKVICLALSSLVVLSSFAYIASYFIKPTFFDHSSYNDVCDHAHDTTSCLAHVSEIIAQDPSLTATKDNKFNMLHSFLVKSTSHIERAVSITNATRLKFNGPGEEVSLDECVELMNLSKERIWNSLVALKEKSTESMQDAHTWLSSVLTNYQTFLDDLQGRPHELLEVELQNLISRARTSLAMLVAILPPKVENIIDKNLKTVNGNFPSWVTSKDRRLLESTARDIKANVVVADDGTGNFKTVKEAVASVPKNSKTRYVIYVKAGLYREIVEISSNKRNVMLVGDGMEETIITGGLNYKDIKNTFRTATVDTLYTHTNRQFYRDCFIRGTVDFIFGDAAVVFQNCTLVARRPMKNQQNMVTAQGRTDQNQNTGTSIQQCNIIPSTDLKPVMKSISSFLGRPWKKYSRTVVMQSLISNHIDPKGWHEWDEEHKDYLETLYYGEFRNRGPGAGTDHRVNWTGFHVLTSDWEANKFTVKELIQGDKWLGSTGVNYIEGLHG 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00932 512 ProSitePatterns Pectinesterase signature 2. 341 350 IPR033131 -
Pste1g00932 512 SMART PMEI_2 45 197 IPR006501 GO:0004857
Pste1g00932 512 Pfam Pectinesterase 325 496 IPR000070 GO:0030599|GO:0042545
Pste1g00932 512 Pfam Pectinesterase 243 324 IPR000070 GO:0030599|GO:0042545
Pste1g00932 512 CDD PMEI-like_4 56 201 - -
Pste1g00932 512 Gene3D - 325 510 IPR012334 -
Pste1g00932 512 Gene3D - 237 324 IPR012334 -
Pste1g00932 512 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 202 IPR035513 -
Pste1g00932 512 PANTHER PECTINESTERASE 325 500 - -
Pste1g00932 512 SUPERFAMILY Pectin lyase-like 241 509 IPR011050 -
Pste1g00932 512 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 197 IPR035513 -
Pste1g00932 512 Pfam Plant invertase/pectin methylesterase inhibitor 51 192 IPR006501 GO:0004857
Pste1g00932 512 NCBIfam pectinesterase inhibitor domain 26 177 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00932 Pste-Chr1 2919113 2921727 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00932 5 510 Carbohydrate Esterase AT1G11580 46.099 1.04e-166 482