Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00929 ATGCAAGAAGATATGAAGAAGCAGCAGAAGCAGAAGCAACTGGTCAATGAAGAATCTAAGAAGAAGGAGCGTCACATTGTGACGTGGACTCAAGAGGAGGATGATATACTCAGGGAGCAGATTGGAGTACATGGAACTGAAAATTGGGCAATTATTGCTTCTAAATTCAAGGACAAAACAACAAGACAGTGCAGAAGAAGATGGTACACTTATTTGAATTCTGATTTCAAGAAAGGGGGATGGTCACCGGAGGAAGACCTGCTTTTATGTGAGGCTCAAAAAATATTTGGTAACAGATGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACTGATAATGCTGTGAAAAACCGCTTCTCCACGTTGTGCAAAAAGAGAGCAAAATATGAAGCCTTGGCAAAAGAGAACAACACTTCATACATCAATTCAAATAACAAGAGAATTTTTTTACAGCATGGGTGTGATGCAGATGTACTATCAGAATCTGCAACTAAGAAGATGAGGAAGTCCCATATCCCTGATGCCGCAGAGAAGATAAACTTTGGAGACAGATCACATAAACAAAATGGAATTCCAATAAATAACCAGTCAAGGGCACCATTTGCAGTTTTAGCTCAAAACTCTCACAATAATGTGAACTTGCCAGGCCAGCACCAAGTCTGCAATCTGAAGTTTAGTGATTATGCCCAAAGCAACAAGATACATGAAACATTCCTTAAAAAGGATGACCCAAAGATAAGTGCATTGATGCAACAAGCAGAGTTACTAAGTTCACTAGCTCTAAAAGTTGATGCAGAGAACATGGACCAAAGTCTTGAAAATGCATGGAAGGTTCTTCAAGAGTTTCTGAACCGAACCAAAGATTCAGACATTCCCAGATACAAGATTCCAGATTTACAACTTGTAGATCTTAAAGATTTATTGGAGGACTTAAGGAGCAGTAGTGAGGAAATCCAGCCATGCTGGAGGCAAATGGAACTATATGAAGACTCTCCAGGAAGTTCTGATTACAGTACAGGATCAACTCTCCTGCTTCATTCAGCAGGTGAGAATTTGGAAAACTCACTGCATCAGGATCTTGGAAATGAACTGAATATGCAAATTGAAGATCCAGAAGGAATTAGGGGATGTGACCAAAGAGTTCTTTCTAGTGCAACTCTGGATCAAAATTTATTCCCATCTTGTGAGGAACAGATAAACAACGATGGACTTGTGGCTGCCTTGTCAAGTTTGGAGGAGTTCAGTTCACCTATTCAAGTTACCCCTCTGTTTAGATCCTTAGCTGCTGGAATTCCTAGCCCACAATTTTCAGAAAGTGAAAGGAACTTCCTTATGAAAACACTCGGAATGGAGTCTCCATCACTTAATCCAAGTGCCAACCCCTCACAACCGCCACTCTGCAAAAGAGCCCTCCTAATCTGAATCTCTAATTCCTCTGAAATATAAAATATTTACAAGTGCTTTCCCCTTTCTTGAACCCTTTCTCCCCATCCGGGGCAATATGGCCGGCTAGTTCTTCTCTGCCTGGTTTGAGAAAGATTGCAATTTTGTTCAGCCTAAAATTTTGAAAGCCATACCCTCCTCCAGAATGTTATGGCACATTCTGAGGATCATCAACACATCTAACAGTGTCCTTTTCTTACCCTCCTCCTCAAAGGGTTACCTTCCTTGATACTTGCACCAAAAAAAATAGCGTGCTTACGTAGTGTGTCATTCTTTGGTTTGTTTTGATATCATTCTGGGTTTGTTTTTTCTCCAATCCAGCTTTTGATCTTGGTTTGCCTTTTTGTACAGAGTTTGCTGTGTGACATTAGTAATCCTGAGTGTATGTATACACCGGCAATTCGCCATCCTACTACATATAATGAACAGAGACATAGATAGAAGAGAGAAAAAAGAAAAAAATAGAGAAAAAAGATTAACCAGTTGCAAATTGGTTTCTCTTTGTTGTTTTGGGTGTGCATAGATCATAGAATAAACATTTTTTATTCCTTTTTAGTTCTGATGTACTGAAACATAATTATAATTGGAGTGGAAATGCATTTTGGCTTGGG 2054 0.3958 MQEDMKKQQKQKQLVNEESKKKERHIVTWTQEEDDILREQIGVHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDLLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNTSYINSNNKRIFLQHGCDADVLSESATKKMRKSHIPDAAEKINFGDRSHKQNGIPINNQSRAPFAVLAQNSHNNVNLPGQHQVCNLKFSDYAQSNKIHETFLKKDDPKISALMQQAELLSSLALKVDAENMDQSLENAWKVLQEFLNRTKDSDIPRYKIPDLQLVDLKDLLEDLRSSSEEIQPCWRQMELYEDSPGSSDYSTGSTLLLHSAGENLENSLHQDLGNELNMQIEDPEGIRGCDQRVLSSATLDQNLFPSCEEQINNDGLVAALSSLEEFSSPIQVTPLFRSLAAGIPSPQFSESERNFLMKTLGMESPSLNPSANPSQPPLCKRALLI 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00929 473 FunFam Transcription factor MYB124 21 77 - -
Pste1g00929 473 SUPERFAMILY Homeodomain-like 25 119 IPR009057 -
Pste1g00929 473 Coils Coil 5 25 - -
Pste1g00929 473 CDD SANT 81 122 IPR001005 -
Pste1g00929 473 Gene3D - 15 77 - -
Pste1g00929 473 CDD SANT 28 72 IPR001005 -
Pste1g00929 473 SMART sant 25 74 IPR001005 -
Pste1g00929 473 SMART sant 77 125 IPR001005 -
Pste1g00929 473 Pfam Myb-like DNA-binding domain 29 88 - -
Pste1g00929 473 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 72 IPR017930 -
Pste1g00929 473 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
Pste1g00929 473 ProSiteProfiles Myb-like domain profile. 29 72 IPR001005 -
Pste1g00929 473 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Pste1g00929 473 PANTHER MYB PROTEIN-RELATED 28 182 - -
Pste1g00929 473 Gene3D - 80 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00929 Pste-Chr1 2902545 2908849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00929 14 323 MYB Transcription Factor Family AT2G02820 63.924 2.61e-140 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste1g00929 Myb_DNA-bind_6 4.7e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00929 1 2902545 2908849 Pste1g00929 1 2902545 2908849 ECH
Pste7g00902 7 8337618 8344694 Pste1g00929 1 2902545 2908849 PCT