Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00921 ATTAAGCTGGCTTCAATAAAAATTAAATTATATTAAGGTTATTATCACCAACTTAATAACTTGAATGTGAACCCTGCATTCTATCTAATCCTTGTTCATAATAAATATTCCATCTTCTTTTCTACATTGTATATTATGACACATCCACCAGTTCCTACCCCATTCCTACCCTCTGCACGTTAGTTTCTTCAATACAATCAAAATCACAACGTGCCCACCTCCCTCCTTTCCCTTCTCATCTTCACTTTTTGCCTTTTGCAACATACATTGCAGTTTGCAGTTGCAGGGCACCTTGTAGTGTTTGCTTTTTTCTTTTTTTTCAGTGAAGGATTGTTCCTTTTTCTCTCTTTTTCAGGCCAAAATGTCAGACCGGGGTACCATCTCCGGCGACTCGGCCGTTGATGCTAAGAGCAAAAAGGAACACAAAGTTTCTCTGTTCAAACTCTTCTCTTTTGCTGACTTCTATGACTATTCCTTAATGGCTCTTGGATCTGTTGGGGCATGTGTACATGGTGCTTCTGTTCCAGTTTTCTTTATCTTCTTTGGAAAGTTGATCAATGTCATAGGCTTGGCCTATCTTTTCCCCAAGGAAGCCTCTCACAAAGTTGCCAAGTACTCGTTGGATTTTGTGTATCTAAGTGTAGCAATATTGTTTTCATCTTGGATAGAGGTGGCTTGTTGGATGCACACTGGGGAACGTCAAGCTGCAAAGATGAGAATGGCTTATTTGAAATCAATGTTGAATCAAGATATCAGCCTATTTGATACGGAAGCATCAACAGGAGAGGTCATTTCTGCCATCACTAGTGATATTATCATTGTGCAAGATGCACTTTCCGAGAAGGTAGGGAATTTCATGCACTACATAAGCCGATTTATAGCGGGCTTTGTTATTGGGTTTGTTAGAGTGTGGCAGATCAGCCTAGTGACACTTTCAATTGTCCCATTGATTGCCGTTGCTGGAGGTCTTTATGCATATGTCACAATTGGGCTTATTGCAAAAGTTCGGAAAGCCTATGTGAGGGCTGGTGAAATTGCTGAAGAGGTGATAGGCAATGTTAGGACGGTCCAAGCATTTGCAGGAGAAGAAAGGGCAGTAAGATCATACAAAGCTGCACTCATGAAAACTTACGTAAACGGTAGAAAAGCCGGTTTGGCAAAGGGCCTGGGCCTGGGCTCAATGCATTGTGTCCTTTTTCTATCGTGGGCTTTGCTTGTTTGGTTCACTAGCATTGTTGTTCACAAGAATATTGCCAATGGAGGAGAGTCTTTCACTACCATGCTCAACGTTGTGATCGCTGGCCTGTCACTTGGGCAGGCAGCACCAGATATATCTGCGTTCATCCGGGCAAAAGCAGCAGCTTATCCTATTTTTGAGATGATAGAGAGGGACACAGTAAGCAAAACTAGCTCAAAAACTGGTCGCAAGTTAGGCAAATTGGAGGGTCATATCCAGTTTAAGAGTGTCTGTTTTAGTTACCCATCTCGTCCAGATGTAGAAATATTCAACAACCTGTGTCTTGACATTCCTTCAGGGAAAATTGTAGCCCTTGTGGGAGGAAGTGGTTCTGGAAAGAGCACTGTCATATCTTTGATTGAACGCTTTTATGAACCACTTTCTGGTCAAATTCTATTAGACAGGAATGATATCAAGGAACTTGATCTCAAATGGCTTAGGCAGCAAATTGGGCTGGTTAATCAAGAACCTGCCCTTTTCGCTACAAGCATCAAGGAGAACATACTTTATGGAAAAGATGATGCCACTCTTGAAGAACTAAAACGTGCTGTGAAGCTTTCAGATGCTCAGTCTTTCATTAATAATCTTCCTGATAGACTAGAAACTCAGGTTGGCGAGAGAGGTATACAACTCTCAGGAGGGCAAAAGCAAAGGATTGCCATATCTCGTGCAATCGTGAAGAATCCATCAATCCTTTTGTTGGATGAAGCGACGAGTGCTCTTGATGCTGAGTCTGAGAAGAGTGTACAGGAGGCTCTTGATCGTGTCATGGTTGGGAGAACAACTGTTGTAGTGGCACACAGACTCTCTACCATTAGGAATGCGGATGTGATAGCTGTTGTACAGGGAGGGAAGATTGTGGAAACCGGTAACCATGAACAGCTCATGTCAAACCCCAGTAGTGTATATGCATCTCTTGTTCAACTCCAGGAGGCAGCTTCTCTGCAGCGCCTCCCATCAGTTGGTCCTAGCATGGGACGCCAACCAAGGTACTTCATTTTCATTGGGATACTTAGGTCCAGATCTTTTTCATGGCCTAAAGAGAACTATCCCGTACAACAACAAGCGTTGGTGGTAGTTTTCGATCAGATAAAGAATCTTTTGGCCGTGTTTGTGCTGAAGAAACAGAAAATGCAAGCAAGAAAAGGCATATTTCAGCAGCAAGGCTGTACTCTATGGTTGGTCCTGACTGGTTTTATGGGCTGGTGCACAGATGCCACTTTTTGCACTAGGAATTTCTCACGCACTCGTATCATACTATATGGACTGGGAGACAACATGTCACGAATTATAACTATCACTGTCCATGCTATTGAACATCTTTCTTTTGGAATCATGGGAGAGCGACTCACCCTTCGTGTGAGAGAAATGATGTTTTCTGCTATCTTGAAGAATGAAATTGGTTGGTTTGATGATACTGGCAACACAAGTTCTATGCTTTCATCGCAGTTAGAGACTGATGCAACATTATTACGAACAATAGTTGTTGATCGTTCAACAATTCTGTTACAGAATATTGGTTTGGTTGTTGCTTCGTTTATTATTGCCTTCCTCTTGAACTGGAGAATAACACTTGTTGTCATAGCCACATACCCTTTGATCATTAGTGAAACTTTTATGAAAGGCTATGGAGGCAACTTGAGCAAAGCATATCTAAAAGCCAACATGCTGGCCAGGGAGGCTGTGAGCAATATACGCACTGTTGCAGCATTTTGTTCTGAAGAAAGGTCCTTGACCTTTATGCTAATGAACTTGTTGATCCCTCAAACGATCATTTCAACGAGGCCAAATTGCTGGGATATTCTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCCTCGCCTTGTGGAGCTTGCTAGCTTTAAATCAATTATGAAGTCATTTATGGTTTTGATAGTAACAGCACTGGCTATGGGAGAGACATTGGCCCTGGCCCCAGATCTTTTGAAAGGGAATCAAATGGTTGCATCTGTTTTTGAAGTGATGGATAGAAAGTCAGGAATATCAGGTGATGTAGGAGAAGAGTTGAAGACAGTAGATGGGACAATTGAGCTCAAAAGAATCCATTTCAGCTACCCTTCAAGGCCAGATGTAATTATTTTCAAGGATTTCAATCTAAGAGTTCCTGCAGGCAAGAGTATTGCCTTAGTGGGGCAAAGTGGTTCTGGTAAAAGCTCAGTGATCTCCCTTATACTCAGATTTTATGACCCAACATCCGGAAGGGTGTTAATTGATGGAGGTGCCTCTGATTCCGAAGTAATTGAAGCAGCTAAGCTTGCCAATGCTCATAACTTCATCAGTGGTCTTCCAGAGGGTTACTCCACCAAAGTAGGTGAACGAGGAGTGCAACTATCTGGCGGCCAAAGACAAAGGGTAGCTATTGCAAGAGCTGTTTTAAAGAACCCTGAAATCTTGCTACTAGATGAAGCCACTAGTGCACTTGATGTGGAGTCAGAGCGTGTGGTGCAACAAGCATTGGACAGATTAATGCAGAAAAGAACAACAGTTATGGTGGCACATAGGCTATCCACCATAAGAAATGCAGATCAAATCTCAGTTTTACAGGATGGAAAGATAATTGAGCAAGGGACTCATTCAAGTCTTATAGAGAATAAAAATGGAGCATACTATAAATTAGTCAACCTTCAACAGCAACAGCATCAATTATAG 3913 0.4206 MSDRGTISGDSAVDAKSKKEHKVSLFKLFSFADFYDYSLMALGSVGACVHGASVPVFFIFFGKLINVIGLAYLFPKEASHKVAKYSLDFVYLSVAILFSSWIEVACWMHTGERQAAKMRMAYLKSMLNQDISLFDTEASTGEVISAITSDIIIVQDALSEKVGNFMHYISRFIAGFVIGFVRVWQISLVTLSIVPLIAVAGGLYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVRSYKAALMKTYVNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKNIANGGESFTTMLNVVIAGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTVSKTSSKTGRKLGKLEGHIQFKSVCFSYPSRPDVEIFNNLCLDIPSGKIVALVGGSGSGKSTVISLIERFYEPLSGQILLDRNDIKELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQSFINNLPDRLETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGGKIVETGNHEQLMSNPSSVYASLVQLQEAASLQRLPSVGPSMGRQPRYFIFIGILRSRSFSWPKENYPVQQQALVVVFDQIKNLLAVFVLKKQKMQARKGIFQQQGCTLWLVLTGFMGWCTDATFCTRNFSRTRIILYGLGDNMSRIITITVHAIEHLSFGIMGERLTLRVREMMFSAILKNEIGWFDDTGNTSSMLSSQLETDATLLRTIVVDRSTILLQNIGLVVASFIIAFLLNWRITLVVIATYPLIISETFMKGYGGNLSKAYLKANMLAREAVSNIRTVAAFCSEERSLTFMLMNLLIPQTIISTRPNCWDILWHFPVLYFLILWPRLVELASFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSGISGDVGEELKTVDGTIELKRIHFSYPSRPDVIIFKDFNLRVPAGKSIALVGQSGSGKSSVISLILRFYDPTSGRVLIDGGASDSEVIEAAKLANAHNFISGLPEGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQKRTTVMVAHRLSTIRNADQISVLQDGKIIEQGTHSSLIENKNGAYYKLVNLQQQQHQL 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00921 1183 ProSitePatterns ABC transporters family signature. 1078 1092 IPR017871 GO:0005524|GO:0016887
Pste1g00921 1183 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 602 IPR027417 -
Pste1g00921 1183 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 977 1175 IPR003439 GO:0005524
Pste1g00921 1183 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 337 - -
Pste1g00921 1183 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 329 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste1g00921 1183 Pfam ABC transporter 996 1045 IPR003439 GO:0005524
Pste1g00921 1183 FunFam ABC transporter B family member 1 27 362 - -
Pste1g00921 1183 FunFam ABC multidrug transporter, putative 1048 1178 - -
Pste1g00921 1183 Pfam ABC transporter 383 531 IPR003439 GO:0005524
Pste1g00921 1183 SMART AAA_5 1004 1152 IPR003593 GO:0016887
Pste1g00921 1183 SMART AAA_5 391 577 IPR003593 GO:0016887
Pste1g00921 1183 SUPERFAMILY ABC transporter transmembrane region 27 334 IPR036640 GO:0005524|GO:0016020
Pste1g00921 1183 CDD ABC_MTABC3_MDL1_MDL2 364 602 - -
Pste1g00921 1183 PANTHER ABC TRANSPORTER B FAMILY 12 605 IPR039421 -
Pste1g00921 1183 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 971 1177 IPR027417 -
Pste1g00921 1183 FunFam ABC transporter B family member 4 354 609 - -
Pste1g00921 1183 SUPERFAMILY ABC transporter transmembrane region 683 958 IPR036640 GO:0005524|GO:0016020
Pste1g00921 1183 Gene3D - 1042 1180 IPR027417 -
Pste1g00921 1183 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524
Pste1g00921 1183 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524|GO:0016887
Pste1g00921 1183 CDD ABC_6TM_Pgp_ABCB1_D2_like 722 962 - -
Pste1g00921 1183 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 722 868 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste1g00921 1183 Pfam ABC transporter 1061 1106 IPR003439 GO:0005524
Pste1g00921 1183 Gene3D ABC transporter type 1, transmembrane domain 914 966 IPR036640 GO:0005524|GO:0016020
Pste1g00921 1183 Pfam ABC transporter transmembrane region 44 312 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste1g00921 1183 Pfam ABC transporter transmembrane region 734 868 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste1g00921 1183 Gene3D - 354 603 IPR027417 -
Pste1g00921 1183 Gene3D - 967 1040 IPR027417 -
Pste1g00921 1183 Gene3D ABC transporter type 1, transmembrane domain 27 877 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00921 Pste-Chr1 2871809 2879693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00921 35 608 Calmodulin-binding Proteins AT2G36910 38.832 5.19e-113 381