LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g00911	CCCTCACCTTCTTTCTTTCTTCTCATCCATTCCTCTCTCTTCAACCACCCAACCCAACCCAACCCAACTTACACTCATTAGTTCCTTGGAAATTGCATACTTAAAAATCTCTTCTTTTTTCTCCTTCACTTTGAATTCTGTTCTCAATTGTGGCAGGGCCTAATGGGTAACTGCCTAGATTCTTCTGCCAAAGTTGATGCAGCTCAGAGCTCCAGATCCACTTCTGGAATCTCGAAAACTACTCCTTCCAGCTTATCTATTCCATCATCATACAGTGGAAAAAGCAATGCTTCAAGTCTTCCCACACCAAGGTCAGAAGGTGAAATCTTGTCTTCTCCCAATCTTAAGCCCTTCACATTCAATGAGCTGAAGAATGCCACTAGAAATTTTCGGCCTGATAGTCTTCTTGGTGAAGGGGGATTTGGATATGTATACAAGGGATGGATTGATGAACACACACTTACGGCTTCAAGACCTGGATCAGGAATGGTTGTTGCTGTAAAGATGCTTAAGCCTGAAGGTTTTCAAGGTCATAAGGAGTGGTTGACTGAGGTTAACTACCTTGGACAACTGTACCATCCTAATCTGGTTAAATTAATCGGTTACTGCTTGGAGGGAGAGAACCGGCTTTTGGTCTATGAGTTTATGCCCAAAGGGAGCCTAGAGAACCATCTATTTAGAAGAGGACCACAACCACTCTCTTGGTCAGTGAGGATGAAAGTGGCTATTGGTGCTGCTAGAGGACTCTCCTTTCTTCATAATGCCAAATCACAAGTCATATACCGAGATTTTAAAGCTTCCAACATCCTTCTGGATGCGGAGTTTAATGCTAAACTCTCTGACTTTGGTTTAGCTAAGGCGGGTCCCACTGGTGATAGAACTCATGTGTCTACTCAAGTCATGGGTACTCAAGGATATGCAGCACCTGAATATGTTGCAACTGGTCGATTGACAACCAAAAGTGATGTTTATAGTTTTGGAGTTGTGTTGCTTGAACTTCTATCGGGAAGACGCGCAGTTGATAAAACAATAGCTGGTATGGATCAGAATCTGGTGGATTGGGCAAGACCATATTTGAGCGATAAACGAAGACTGTTCCGGATTATGGATACCAAGTTAGAGGGGCAATACCCGCAAAAGGGTGCCTTCATGGCTGCCACACTTGCTCTACAATGTCTTAACAGTGAAGCCAAGGCAAGGCCTCCAATGACAGAAGTCTTAGCAACTCTGGAACAGATAGAAGCCCCTAAAACTGCAGGCAGAAACTCACATTCAGAACATCATAGAGTTCACACCCCTGTGAGAAAATCTCCTGCACGAAACCGGTCACCTTTAAATCTAACTCCTACTGCATCCCCTCTGCCATCTCATCGGCAATCGCCTCGTGTGCACTGAGTTGTGAACATGAAACATCTGTTTGTAAATTCCTTATTTTTATCAGGTTGTGTTTTGGAAAGCATGCGTTGAGGCATGTGCACTTAAATGCAATTTTGGTCGTGCTCTGTAGAATAGTTAACACCATTTATCCAAATGCTATGCCAGTTATTGCAGCAGTCTTCTGCATGTTCTTTGATTTTTATATCAGCTTTTCCCGCATGGAATGTATCTTTTTGATAATAACAACCGGACACATTGCCTCCCTTATATTGTAGGTCGGTGCCTCTTGTTACTTGGGATTTGGAACCCTTAAACCTAT	1696	0.4316	MGNCLDSSAKVDAAQSSRSTSGISKTTPSSLSIPSSYSGKSNASSLPTPRSEGEILSSPNLKPFTFNELKNATRNFRPDSLLGEGGFGYVYKGWIDEHTLTASRPGSGMVVAVKMLKPEGFQGHKEWLTEVNYLGQLYHPNLVKLIGYCLEGENRLLVYEFMPKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTTKSDVYSFGVVLLELLSGRRAVDKTIAGMDQNLVDWARPYLSDKRRLFRIMDTKLEGQYPQKGAFMAATLALQCLNSEAKARPPMTEVLATLEQIEAPKTAGRNSHSEHHRVHTPVRKSPARNRSPLNLTPTASPLPSHRQSPRVH	410

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g00911	410	FunFam	Serine/threonine-protein kinase BIK1	43	161	-	-
	Pste1g00911	410	MobiDBLite	consensus disorder prediction	361	410	-	-
	Pste1g00911	410	Gene3D	Phosphorylase Kinase; domain 1	52	161	-	-
	Pste1g00911	410	MobiDBLite	consensus disorder prediction	1	59	-	-
	Pste1g00911	410	Gene3D	Transferase(Phosphotransferase) domain 1	162	382	-	-
	Pste1g00911	410	ProSitePatterns	Protein kinases ATP-binding region signature.	82	114	IPR017441	GO:0005524
	Pste1g00911	410	FunFam	Probable serine/threonine-protein kinase PBL8	162	375	-	-
	Pste1g00911	410	MobiDBLite	consensus disorder prediction	385	403	-	-
	Pste1g00911	410	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	205	217	IPR008271	GO:0004672\|GO:0006468
	Pste1g00911	410	SUPERFAMILY	Protein kinase-like (PK-like)	47	356	IPR011009	-
	Pste1g00911	410	MobiDBLite	consensus disorder prediction	9	59	-	-
	Pste1g00911	410	Pfam	Protein tyrosine and serine/threonine kinase	80	355	IPR001245	GO:0004672\|GO:0006468
	Pste1g00911	410	ProSiteProfiles	Protein kinase domain profile.	76	359	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste1g00911	410	CDD	STKc_IRAK	82	359	-	-
	Pste1g00911	410	PANTHER	OS01G0588500 PROTEIN-RELATED	33	360	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g00911	Pste-Chr1	2827743	2831281	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g00911	52	356	Glycoside Hydrolase	AT3G07070	53.247	2.12e-111	331

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Pste1g00911		PK_Tyr_Ser-Thr	1e-47	CL0016