Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00883 GTTGTTTAGAGGGTAAGTGGATTTGAAGTGAGGCGCAAGCAGAGGGTGACCACGGCCTTAGTTCAATCCAATTGGTGTCTTTGTATGTTCAAAGCAACTGTTTTTTTTTTTTCTTTCATTTCTCCCTCCACAATCTAATTTCTTCTCCAACAACTTAGGGTTTCCCTTTTCCCAACAATGCCACACATTCCGTAATTACCCTCTTTCTTTCTTTCAACTTAATTTCTATTTCCGGAAATGGACGGCACTCCGGCGGCGCCGATTCCGAACGCGAACGCGCCGCCCCCGTTTCTGAGCAAGACCTACGACATGGTCGAGGACCCTTCCACCGACGCGATCGTGTCCTGGAGTGCTTCCAACAACAGCTTCATCGTCTGGGACCCACCCGAATTCGCCAGAGACCTTTTGCCTAAATTCTTCAAACACAACAACTTCTCCAGCTTCGTTAGACAGTTAAACACCTACGGTTTTAGGAAGGTCGATCCAGATCGCTGGGAATTTGCAAATGAGGGTTTTTTGAGGGGTCAAAAGCACTTGCTTAGGAGTATAACACGACGAAAACCTGCCCATGGGCATAATAATCAACAGGCTCAGCAACCACATGGACAGAGTTCATCAGTAGGGGCATGTGTAGAAGTTGGGAAGTTTGGACTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAATGTGCTCATGCAAGAACTTGTTAGGTTGAGGCAGCAGCAACAGACCACTGATAACCAGCTGCAAGCAATGGTTCAGCGCCTTCAGGGAATGGAGCAACGACAGCAGCAAATGATGTCATTCCTTGCAAAAGCTGTCCAGAGCCCTGGCTTCTTTGCTCAGTTTGTACAGCAGCAAAATGAGAGCAATAGGCGCATAACTGAAGTCAACAAAAAACGTAGGCTTAAGCAGGAAGGTATTGCTGAAACTGATGCTGCTGCTCCAGACGGTCAAATTATTAAATATCAACCTCTGATGAATGATGCAGCAAAAGCCATACTTAGGCAGATCATGAAATGGGATACTTCTTGTGTAGAACCTTTCAATAATAATAATAATAACTCTGACAACTACATGATTGGTGATGCTTCATCATCTTCCAGTGGGATGGACAGTAACAGCTCTTCAGGCTGGACTTCTGGAGTAACTCTTAAAGAGGTCTCTCCAGCTTCGATGCAGTCTTCACAAGTTCCAACTGCAAGTGGAACACAGGGGAATGTCCCTTCAGCCATTAAACCTGAAGTTTTATCTGTACCACAAGCAGTGGCTTCTGAAAATGTTGCAAAGGATGGAGCACATGATGCACCTTCTATCCCTGTTTCTCAAGCAGATGTGATGATCCCTGATCTTCCTCCAATAACAGAGATGGTGACTGGAAATATTCTTGATATTCCTGAAGAAAATTATATGGCAACTGAAACAGATGAGGGATATATGGGTCCTTCATTGGGGGTTGGTGGGTCATTTCCCGTTGATTTTGAAGGCATCTCACCTGATGCAGACATTGATGATTTTTTAGGCAATCCTTCTATTTGGGATGAAATTTTGCAAGCTCCAGTTCCAGAAGATATCGATACCAATTTGGCCGAAGTATCCAAGGGGAATGAAGTCCAGCCAACGGAAAATGGATGGAACAAAACTCAACATATGGATCACCTTACAGAGCAGATGGGTCTTCTTTCTTCCGATGCAAAAAGAGTTTGATTATATATGAAATTTATATTCTCTTTTATATTGTCTAAGGTAATCCCTGACCCAAACAATACACCACTGAAGTGATCTATAATATATATAATTACACTTCCACTTGGTCACTG 1823 0.4361 MDGTPAAPIPNANAPPPFLSKTYDMVEDPSTDAIVSWSASNNSFIVWDPPEFARDLLPKFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSITRRKPAHGHNNQQAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQAMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNESNRRITEVNKKRRLKQEGIAETDAAAPDGQIIKYQPLMNDAAKAILRQIMKWDTSCVEPFNNNNNNSDNYMIGDASSSSSGMDSNSSSGWTSGVTLKEVSPASMQSSQVPTASGTQGNVPSAIKPEVLSVPQAVASENVAKDGAHDAPSIPVSQADVMIPDLPPITEMVTGNILDIPEENYMATETDEGYMGPSLGVGGSFPVDFEGISPDADIDDFLGNPSIWDEILQAPVPEDIDTNLAEVSKGNEVQPTENGWNKTQHMDHLTEQMGLLSSDAKRV 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00883 490 Gene3D - 11 108 IPR036388 -
Pste1g00883 490 ProSitePatterns HSF-type DNA-binding domain signature. 57 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste1g00883 490 SMART hsfneu3 14 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste1g00883 490 SUPERFAMILY "Winged helix" DNA-binding domain 13 107 IPR036390 -
Pste1g00883 490 Coils Coil 136 163 - -
Pste1g00883 490 FunFam Heat shock transcription factor 1 11 108 - -
Pste1g00883 490 Pfam HSF-type DNA-binding 18 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste1g00883 490 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste1g00883 490 PRINTS Heat shock factor (HSF) domain signature 56 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste1g00883 490 PRINTS Heat shock factor (HSF) domain signature 18 41 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste1g00883 490 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 294 IPR027725 -
Pste1g00883 490 MobiDBLite consensus disorder prediction 310 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00883 Pste-Chr1 2721269 2725505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00883 5 484 HSF AT1G32330 55.600 1.76e-170 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pste1g00883 HSF_DNA-bind 1.2e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00883 1 2721269 2725505 Pste1g00883 1 2721269 2725505 ECH