Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00865 GTTTTTAAAGAGTAAAATTGGATGAATAGAAAAAGAAGCAAGGGGGGAAGGTTTTGGAATCTGTGTGCCCTAATGGGAGACGAAGAAGTGGAAGAGGAGGAGGAGGAGGTGGTGGGTTCGGGGCAATCAGCCTCCACCAACAGCTTGGCACCTTCCCCGCTCCTCAAATTCAACCATCTTGACATTCATGCTGATGATGCTGCTTCTGTTGCCACTGCCAAGAAGAAAAAGAGAGGAGGCCACCGGGCCGTTGGCCCCGACAAGTCTGGAAGAGGTCTCCGCCAATTTAGCATGAAAGTCTGTGAGAAGGTAGAAAGCAGGGGAAGGACTACTTACAATGAGGTCGCTGATGAGCTTGTTGCCGAGTTTTCTCATCCTTCCAATTCTGAATTGACCCCTGATCAGCAACAATACGATGAGAAAAACATCCGCCGGAGGGTCTACGATGCTTTGAACGTTCTCATGGCTATGGATATTATTTCTAAGGACAAAAAGGAAATCCAATGGAAGGGTCTTCCTCGGACTAGTGTCAATGATATTGAAGAACTAAAGACAGAGCTTCTTGGGCTCAGGAATAGAATTGAAAAGAAAACAGCCTATCTGCAAGAGCTTGAGGAGCAACTCATAGGCCTTCAGAACCTTATTCAACGAAATGAGCAGTTATATAGCTGTGGAAATCCTCCCAGTGGAGGTGTATCTTTGCCTTTTATTCTGGTATACCATCATCCCATTATCTCCATTTTTGGTTTCCAGATATTAACAACTCATGCTATGTTTACCTTGCTCAGTTTTCCTGTCGGCATTATATCTACTCAAGGTTTATGTGGGTCTTTAATATATAGAGGATTCTTGGTCATGACACGTCCTCATGCAACTGTGGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAATAGTACTCCTTTTGAGCTGCACGATGATAATTTTGTTCTCAAGGCAATGAAATTTTGTGAGAGACCACAGGATGATAATATGACACACAATCTTACTGACGGAGGTGAAGGTTCAAGCATGTCAGGCTTGTGTCAACCACAGGCTCCTTCGACAAATTTAAACACGTCAAATAGGCCTCCAACATCACCTCCTCTGCCTGGCATATTAAAGGCAAGAAGAAATTTGCTGCAGTTGATAGACCGTCATAATAGTTATTCATCAGTACAGCCAAGTCACTCTGTAGTTTTCCAGTTTAGCCAATCTGGACCAATGCATCTTGTTTGTTTTGCAGCATTTAGTTGGGTACACTTGCTATTTCAAAATAACTTTGATGGAATTTTGGGTGTTACAGACATGGCGTGTGCAATCTTATTCACGGTGTTTCGTTTTCCATTAGCAATTGTTTCTGCATATGTAAAGGAACAGTGTCTTGATATGTTTGGA 1410 0.4262 MNRKRSKGGRFWNLCALMGDEEVEEEEEEVVGSGQSASTNSLAPSPLLKFNHLDIHADDAASVATAKKKKRGGHRAVGPDKSGRGLRQFSMKVCEKVESRGRTTYNEVADELVAEFSHPSNSELTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEELKTELLGLRNRIEKKTAYLQELEEQLIGLQNLIQRNEQLYSCGNPPSGGVSLPFILVYHHPIISIFGFQILTTHAMFTLLSFPVGIISTQGLCGSLIYRGFLVMTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNFVLKAMKFCERPQDDNMTHNLTDGGEGSSMSGLCQPQAPSTNLNTSNRPPTSPPLPGILKARRNLLQLIDRHNSYSSVQPSHSVVFQFSQSGPMHLVCFAAFSWVHLLFQNNFDGILGVTDMACAILFTVFRFPLAIVSAYVKEQCLDMFG 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00865 463 Pfam E2F/DP family winged-helix DNA-binding domain 84 164 IPR003316 GO:0005667|GO:0006355
Pste1g00865 463 SMART E2F_TDP_2 81 164 IPR003316 GO:0005667|GO:0006355
Pste1g00865 463 MobiDBLite consensus disorder prediction 25 44 - -
Pste1g00865 463 MobiDBLite consensus disorder prediction 65 84 - -
Pste1g00865 463 MobiDBLite consensus disorder prediction 330 360 - -
Pste1g00865 463 Gene3D Transcription factor DP 170 240 IPR038168 -
Pste1g00865 463 Gene3D Transcription factor DP 276 336 IPR038168 -
Pste1g00865 463 SUPERFAMILY E2F-DP heterodimerization region 171 235 IPR037241 -
Pste1g00865 463 Coils Coil 173 214 - -
Pste1g00865 463 Pfam Transcription factor DP 172 233 IPR014889 -
Pste1g00865 463 Pfam Transcription factor DP 277 331 IPR014889 -
Pste1g00865 463 Gene3D - 78 169 IPR036388 -
Pste1g00865 463 SMART DP_2 171 377 IPR014889 -
Pste1g00865 463 CDD DP_DD 169 318 IPR014889 -
Pste1g00865 463 PANTHER TRANSCRIPTION FACTOR DP 45 332 IPR015648 GO:0005667|GO:0051726
Pste1g00865 463 SUPERFAMILY E2F-DP heterodimerization region 277 331 IPR037241 -
Pste1g00865 463 MobiDBLite consensus disorder prediction 328 365 - -
Pste1g00865 463 FunFam Transcription factor-like protein DPB 76 169 - -
Pste1g00865 463 SUPERFAMILY "Winged helix" DNA-binding domain 84 165 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00865 Pste-Chr1 2672092 2675266 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00865 57 328 E2F-DP Transcription Factor Family AT5G02470 41.758 7.24e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pste1g00865 DP 1.1e-16 No_clan