Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00854 GCTTATGTATTTTGTCTTTGTATGTGTCATCATCATTGCATGAAGGATCAAAATCTTGAATCTAGGGAAAAGGAAGAGGCTAGAGAAGAAAACAAGATGCTGAAGTTCTTTGATATCCTTCAACAAGATAAACCTGAAGATGCTGCAAATGCTAATAAAGGTAGGTTTGGCCATGACGAAAATGAAGAAAGTGAACTTGTGTCACTTTGTCTTGGGATATCATCAAAAGGCAAGCCTACCAAAGATGAGAAAATGAATAAAAATGGAACTGAAAAGAGAGAAGATGAGGATATGGAAACGAGACTTGTACTTGGGTTAGATATCAATTTGGATCCTGAAGATCAAGCTGAAGGTGCAATTAATCTAAGCACTGAAAGTAGCGTTGGTGAGGGAGCTGGGAAGGAAGAGGAAGCAACTGAGATGTGGCCACCTAGTAAAGTTTTGAGGACAATGAAAAGTGTGGATAAAAGTGAAGCTTCTCAAGTTGATCAGCCCAAGAAGACTAGGGTTTCAATTAGAGCCAGATGTGATACCCAAACGATGAATGATGGGTGCCAATGGAGAAAATATGGACAGAAAATGGCAAAAGGAAATCCATGCCCACGAGCGTACTATCGATGCACTGTTTCTCCATCTTGTCCTGTAAGAAAACAGGTTCAAAGATGTGCTGAAGACATGTCCATTTTGATTACCACCTATGAAGGAACCCACAATCACCCACTTCCAATGTCAGCCACTGCAATGGCATGCACAACTTCTGCTGCTGCTTCCATGCTTCAATCTCCGTCATTGGGTTCACAACATGGACTGGTCAACTCAGCTATATCTTCCATTATCAACTCTAGTGGTCCTAATTATTACAACCCTAATGCTCTAAACTTCTCCACATACCAAGTTTCAAGACCACACCAATTCTACTTCCCCAACTCATCCATTTCAACCTTGAATTCTCACCCCACAATCACTCTAGACCTTACAGCACCCCCAACTTCCTCAAACTCAAGCTTCACTACTTGCATGCCAAAATACTCATCTACAAACCTTAACTTTTCCTCAGGTTTCTCCCCTCTACAATGTAGCATGCCTCATCAAAAACCTTGGGGCGGTTATATTGGTTACTTCAACTCTGGACCACTAACTCAAAATAGAAACCAAGGTGGTAATTTCTTGTTAAACACTGGAAATCAACCATCGCTAGGGCATCACCATCAACCAATTTACATGAGCAACAATAACGTTTCTCAACAGTCTTCTCCTGATCCCATTTTTGCAGCAACCAAGGCAATCACAAATAACCCAAAATTTCAGTCAGCATTAGCGACTGCTCTCACAGAATATGTTGGCAATGAAGCTTGTGATGGTAGGTTAAGAGAAAATCATGTTCTTGAGAGTGCAGAACTGAACTTAAAGCTATGTTGTGAAAATAGCATAGGATGTGCATCATCGAAGTGCTTGAATATGTCTTCCTCTTCTCTTAAGTCTCAACAAGGAAACTCAAGTATATTTCCCCTAACACTACCGGAGCAATGGAAGTGA 1536 0.4089 AYVFCLCMCHHHCMKDQNLESREKEEAREENKMLKFFDILQQDKPEDAANANKGRFGHDENEESELVSLCLGISSKGKPTKDEKMNKNGTEKREDEDMETRLVLGLDINLDPEDQAEGAINLSTESSVGEGAGKEEEATEMWPPSKVLRTMKSVDKSEASQVDQPKKTRVSIRARCDTQTMNDGCQWRKYGQKMAKGNPCPRAYYRCTVSPSCPVRKQVQRCAEDMSILITTYEGTHNHPLPMSATAMACTTSAAASMLQSPSLGSQHGLVNSAISSIINSSGPNYYNPNALNFSTYQVSRPHQFYFPNSSISTLNSHPTITLDLTAPPTSSNSSFTTCMPKYSSTNLNFSSGFSPLQCSMPHQKPWGGYIGYFNSGPLTQNRNQGGNFLLNTGNQPSLGHHHQPIYMSNNNVSQQSSPDPIFAATKAITNNPKFQSALATALTEYVGNEACDGRLRENHVLESAELNLKLCCENSIGCASSKCLNMSSSSLKSQQGNSSIFPLTLPEQWK 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00854 511 MobiDBLite consensus disorder prediction 77 98 - -
Pste1g00854 511 Pfam WRKY DNA -binding domain 182 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste1g00854 511 SUPERFAMILY WRKY DNA-binding domain 174 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste1g00854 511 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 25 453 IPR044810 GO:0003700
Pste1g00854 511 MobiDBLite consensus disorder prediction 41 98 - -
Pste1g00854 511 Gene3D WRKY domain 166 243 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste1g00854 511 ProSiteProfiles WRKY domain profile. 176 242 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste1g00854 511 FunFam probable WRKY transcription factor 31 166 243 - -
Pste1g00854 511 MobiDBLite consensus disorder prediction 41 65 - -
Pste1g00854 511 SMART WRKY_cls 181 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00854 Pste-Chr1 2637609 2639978 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00854 23 448 WRKY Transcription Factor Family AT5G15130 40.000 2.22e-64 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pste1g00854 WRKY 2.6e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00854 1 2637609 2639978 Pste1g00854 1 2637609 2639978 ECH
Pste1g00854 1 2637609 2639978 Pste6g02515 6 12435759 12442075 ECH
Pste1g00854 1 2637609 2639978 Pste5g00920 5 5992580 5996429 ECH
Pste1g00854 1 2637609 2639978 Pste6g02515 6 12435759 12442075 PCT
Pste6g03850 6 27724974 27729661 Pste1g00854 1 2637609 2639978 PCT