Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00818 ATGGCTAAATTGGTCAACTTCATCCTGTTAACCTTTTTGGCAGTCACTATACCTACTTTGCATGCCAATGTCAAAGAAGATGAAGTCTATTGGGTGAGGCAAAGTCAAGTACTTGATCATGATGCATATTGGAAGGAAAGAAAAATAGTAGCTGAAAAAGATAACGAAGAAGCTTATACTTCTGATCCATACTCACTCACCAGCAACTTGACTGATAGTGTTAGCGACATCATTAATAGTGATACTCATGGAAGAAGGAATTTGGGGGCACGTAACAAGGGTCCATGCATGGCAACAAACCCCATTGATAGGTGTTGGAGGTGTGACCCCAATTGGGCAAACAATCGCAAGAAGCTTGCAGATTGTGTGCAAGGTTTTGGCAGAAACACTATTGGTGGAAAGAATGGTCCCATCTATGTGGTAACTAGTCCTGCAGATAATGACAATGTAAATCTTGTTCCTGGTACCCTTAGGCATGCAGTTACAAGAAATGGACCATTGTGGATCATCTTTTCCCATAGCATGAAAATTAGGCTCAACCAGGAGCTCATAATGGCAAGTGACAAGACCATTGATGGAAGAGGAGCTGATATCTACATAATGAGTGGGGCTGGTATTACCATTCAGTATATCAAGAATGTGATCATCCATGGAATCAAAATTTTTGACATTCAGGTTGGCACTGGTGGACTTATTAGAGATTCTGAGAGCCACTATGGTATTAGGACTCAGAGTGATGGTGATGGTATTTCCATCTTTGGCTCCAGCCATGTTTGGATTGACCATGTTTCCATGAGAAACTGCAGAGACGGATTGATAGATGCCATTCAGGCTTCCACTGCTATTACCATCTCCAATAGCCATTTCACCGACCACAATGAGGTGATGTTATTTGGGGCTAGTGACAGTTATGATGGTGATAAGATAATGCAGATCACATTGGCATTCAACCACTTTGGCAAGAGATTAATCCAAAGGATGCCAAGGTGCAGATATGGTTTTGTCCATGTGGTTAATAACGATTATACTCATTGGGAAATGTATGCCATTGGTGGTAGCAAGAATCCTACTATTATTAGTGAGGGCAACCGATTCGTAGCCCCTGACAACACTAATGCTAAAGAGATAACAAAGAGGGAGTACACAACAGAGCAAGTGTGGAAAAACTGGCAATGGAGATCAATCAATGATGAGTACATGAATGGAGCATTTTTCAGAGAAGGTGGGGCCAAGCTAACAGATAGGCCATTCTCAAGGCAAGACATGATGTCAGCCAGGCCTGGCTCATATGTGGGAAGGCTCACTCGCTATGCTGGAAGCCTTAGGTGCGTTGTGGGAAAGCCTTGTTAGAAATGAAACCCTAAACCCTAAATTCCATAAGTTTTCCTCATTGCTTTTTCTTCAGTTTATTGGAAAGAAAAAGGTGAAAAAAAGCTATGGGAATTCCACGTCTCATTTGTAAATGATGTACATTTACATACTCACCCACCATGTGCATATACGTACCACCGTCTCTTATTATAAGTTGGTATGTTAAATTTATTTATTTCTAAACTAGATTTTTATAACATAGCACCTACAATGTTGGCC 1590 0.4107 MAKLVNFILLTFLAVTIPTLHANVKEDEVYWVRQSQVLDHDAYWKERKIVAEKDNEEAYTSDPYSLTSNLTDSVSDIINSDTHGRRNLGARNKGPCMATNPIDRCWRCDPNWANNRKKLADCVQGFGRNTIGGKNGPIYVVTSPADNDNVNLVPGTLRHAVTRNGPLWIIFSHSMKIRLNQELIMASDKTIDGRGADIYIMSGAGITIQYIKNVIIHGIKIFDIQVGTGGLIRDSESHYGIRTQSDGDGISIFGSSHVWIDHVSMRNCRDGLIDAIQASTAITISNSHFTDHNEVMLFGASDSYDGDKIMQITLAFNHFGKRLIQRMPRCRYGFVHVVNNDYTHWEMYAIGGSKNPTIISEGNRFVAPDNTNAKEITKREYTTEQVWKNWQWRSINDEYMNGAFFREGGAKLTDRPFSRQDMMSARPGSYVGRLTRYAGSLRCVVGKPC 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00818 449 SMART amb_all 174 371 IPR002022 -
Pste1g00818 449 PANTHER PECTATE LYASE 18-RELATED 51 447 IPR045032 GO:0030570
Pste1g00818 449 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Pste1g00818 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Pste1g00818 449 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Pste1g00818 449 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Pste1g00818 449 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Pste1g00818 449 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Pste1g00818 449 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Pste1g00818 449 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Pste1g00818 449 Gene3D - 99 442 IPR012334 -
Pste1g00818 449 Pfam Pectate lyase, N terminus 39 88 IPR007524 GO:0030570
Pste1g00818 449 SUPERFAMILY Pectin lyase-like 100 440 IPR011050 -
Pste1g00818 449 Pfam Pectate lyase 185 365 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00818 Pste-Chr1 2542720 2545455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00818 1 449 Polysaccharide Lyase AT1G14420 55.269 0.0 514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00818 1 2542720 2545455 Pste1g00818 1 2542720 2545455 ECH
Pste1g00818 1 2542720 2545455 Pste5g00928 5 6070589 6072238 ECH