Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00797 ATGCTTGAAACTCTCTCGAAAATGTATATTCTTATGCTCATCCTTCAGATCTCGGGCATTGTTATAATTTTTAATGATTTTGATGCGATTTCCCATGCTTCAGAGTGTGATATATGCTCTTTAGCGATGCTTAAGGTGGAAAGAAGAGTGACTTTATCAAAGGAAGTTAGAAATGGGTTAGAATTTTTGAAGCGTAAAAAGCTTCAGCGTGCAAAATCTGTTACTGCCACCCAGACAAGTATTGCTAACATGATGAACAGAAGTGGAGGAGATGCTTTAAGAGCTTCAGCATCATGTGGCATGGGATTTCATGGTAATGCTGATGTCTTTTCCAAGCGCAAGGTGGATAAGTTTGATACAAATGACCTGGAATGGACTGATAAAATTCCAGAATGTCCTGTGTATTCTCCAACAAAGGAGGAATTTGAGGATCCTTTGATTTATTTGCAAAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATCATTTCCCCTTTGAATGCTTCGGTACCTGCTGGGGTTGTTTTAATGAAGGAGAAAGCCGGATTCAAGTTTACAACTAGGGTGCAGCCCCTTCGCCTTGCTGAATGGGATACAGAAGACAAAGTCACATTTTTTATGAGTGGAAGAAATTATACATTTCGTGATTTTGAGAAAGTGGCAAACAAGGTATTTGCACGAAGATATTGCAGTGCTGGATGTCTTCCAGCCACATACTTGGAAAAAGAGTTTTGGCACGAAATTGGTTGTGGGAAAATGGAAACTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCCACTGACCAGCTCGGGAACAGCAAATGGAATTTGAAGAAAATTTCAAGATTGCCCAAATCGATTTTACGGCTCTTGGAAACATCAATTCCGGGAGTAACGGAACCCATGCTATACATTGGAATGCTGTTTAGTATCTTTGCTTGGCATGTCGAGGATCATTACTTGTACAGCATTAACTATCATCACTGTGGGGCGTCAAAAACATGGTATGGTATTCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACACGTCTACACTAATGATATTTTGTCAAGTGATGGTGAAGATGGAGCCTTTGATGTTCTCCTTGGGAAAACAACACTATTTCCACCAAATATTTTGTTGGAGCATGAAGTCCCTGTCTACAAGGCTGTTCAAAAGCCAGGGGAGTTCATAATAACTTTTCCAAGAGCATATCACGCTGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCAATTGGGGATTGGTTTCCTTTAGGGGCTGTTGCTAGCAGAAGATATGCAATTCTTAACAGGGTTCCTTTACTGCCCCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTTCGTACATGCTTGGAACTTGAAGATTCAGATTTTCCTTCTGCAGACTTGTTTTCTCACAATAGCATTAAGATTTCATTTGTTAACTTGATGCGTTTCCAACATTGTGCTCGATGGTTTCTAATGAAATCAAGGGCAAGTATAAGTGTCTCTTCTCATTCCCATGGCACAATTCTCTGCAGCCTTTGCAAACGTGACTGTTACATAGCTTATGTTGACTGCAACTGTCACATGCATCCTGTTTGCCTACGTCATGGTAAGCTTTGGTCATTGTTATTTATTAATGTCATTAATAATTATGACTTGTGA 1716 0.4003 MLETLSKMYILMLILQISGIVIIFNDFDAISHASECDICSLAMLKVERRVTLSKEVRNGLEFLKRKKLQRAKSVTATQTSIANMMNRSGGDALRASASCGMGFHGNADVFSKRKVDKFDTNDLEWTDKIPECPVYSPTKEEFEDPLIYLQKIAPEASKYGICKIISPLNASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFMSGRNYTFRDFEKVANKVFARRYCSAGCLPATYLEKEFWHEIGCGKMETVEYACDVDGSAFSSSPTDQLGNSKWNLKKISRLPKSILRLLETSIPGVTEPMLYIGMLFSIFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAVASRRYAILNRVPLLPHEELLCKEAMLLRTCLELEDSDFPSADLFSHNSIKISFVNLMRFQHCARWFLMKSRASISVSSHSHGTILCSLCKRDCYIAYVDCNCHMHPVCLRHGKLWSLLFINVINNYDL 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00797 571 SUPERFAMILY Clavaminate synthase-like 210 465 - -
Pste1g00797 571 Pfam jmjN domain 133 165 IPR003349 -
Pste1g00797 571 SMART cupin_9 276 449 IPR003347 -
Pste1g00797 571 Pfam JmjC domain, hydroxylase 309 432 IPR003347 -
Pste1g00797 571 FunFam Lysine-specific demethylase isoform A 127 476 - -
Pste1g00797 571 SMART JmjN_1 131 172 IPR003349 -
Pste1g00797 571 ProSiteProfiles JmjN domain profile. 132 173 IPR003349 -
Pste1g00797 571 Pfam C5HC2 zinc finger 529 554 IPR004198 -
Pste1g00797 571 Gene3D Cupin 132 484 - -
Pste1g00797 571 PANTHER LYSINE-SPECIFIC DEMETHYLASE 124 554 - -
Pste1g00797 571 ProSiteProfiles JmjC domain profile. 279 449 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00797 Pste-Chr1 2483184 2487177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00797 129 463 JUMONJI Transcription Factor Family AT2G34880 37.563 2.56e-64 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pste1g00797 JmjC 6.7e-40 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00797 1 2483184 2487177 Pste1g00797 1 2483184 2487177 ECH