Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00788 AATGTAATGAAGCAAGCAACATTGCATAAAAAAAAAAATGACTGCAATAAAATCGCAGGCGAAACGTCACAGTCACACCCTTCCCTCACACAGAAAAAGTGTCACCCAGCAAGCCACAGCTTAGGGTTAGTCTGTTATTGGTTTTCTTCTTGTTCTACTTCTCCTCCTTCTTCTGGTTCAACCCAAACAAGCCCTTAGAAACAAATTCACATTCCGAAAACACCCTTGTTGTTGTTACGCATGGCGAAAACGAGACCAGGCAGAAAGGACTTGGACTCGTACACCATAAGAGGGACCAACAAGATCGTCCGAGCTGGAGACTGTGTTCTGATGCGGCCATCGGACACGTCGAAGCCCCCTTACGTGGCACGTGTGGAGAAGATCGAGCAGGACAACAGGAACAACGTGAAGGTGCGTGTGAGGTGGTACTACAGACCCGAAGAGTCGATTGGGGGTCGCAGGCAGTTCCATGGGGCAAAGGAACTGTTTCTCTCTGACCACTACGATGTGCAGAGTGCTCACACCATCGAAGGCAAGTGTGTGGTCCACTCTTTCAAGAACTACACTAAGCTTGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTCGAGTACAAGGCTGCAACTGGAGCTTTCACCCTGACCGCGTCGCTGTGTGAGTATTGTAAGTGTGAGATGCCTTATAACCCCGATGACCTAATGGTACAATGTGAAGGGTGTAAGGATTGGTATCATCCTGCTTGTGTGGGAATGACTATTGAAGAAGCAAAGAAACTAGACCATTTTGTGTGTTCCGAATGTTCATCCGATGATGATATCAAGAAACCCCAAGCTACATTTTCTGCATCACCGGGAGCTGATGGCAAGGCAATATCTAATTGTGTTTCATTTGTCTCTTTTCCTCGACTCGCCTCCCTGTTGTTGAACAATGGCAACAATGTTGCCTATGAGCTACACCACTATGAGTTCTCCATCACTACATACCCTAAAGAGGTCGCTATTGATCTTCGGAAACAGCCTCATTGCTGTCATTATAGGTGTCATGGATTTGGTATTGTGATACATGGGAGCAATGGGAGGGAAAGGTGGACGGTGGACTTGGTTTTGAGGTGGGGGAGGAGTAGTGGCAATGGTTCTCTGTGTAGAGCCAAAGAGGCGAAAGAGATGACCATAACATGCAGTGGTAACATTGAGAAGCGTGCGTCACTCTTGCTATGCTACCTTTTGTGTGTGTTGTACAGCTTCTTCTAGAGGCTATAAAAACATTTAATGTATTTGACTCAGCTTATTATGTATCTATTCGTGTTAGATTTTATCATCCTTTGTCCATTAAGAGTAAGACAACTACTCCGATCCAAGTGTTCATTCCTGAGATGATGACATCAAACCTTGAAAACTTAGTACAGAGAGCAATTTAGTCTCAAATGTTGCTTTGGTGTTACAAATAAGTGTTAATAACATTATCTCACACACATTCATGTTGATATAAAAAGAGCACCCTTCTTAATCCACTATTGTTGGATAAAATTTATTAAAAATAA 1541 0.4374 MAKTRPGRKDLDSYTIRGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDNRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTLTASLCEYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDIKKPQATFSASPGADGKAISNCVSFVSFPRLASLLLNNGNNVAYELHHYEFSITTYPKEVAIDLRKQPHCCHYRCHGFGIVIHGSNGRERWTVDLVLRWGRSSGNGSLCRAKEAKEMTITCSGNIEKRASLLLCYLLCVLYSFF 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00788 336 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Pste1g00788 336 SMART PHD_3 141 188 IPR001965 -
Pste1g00788 336 CDD BAH_BAHCC1 22 133 - -
Pste1g00788 336 SMART BAH_4 21 136 IPR001025 GO:0003682
Pste1g00788 336 ProSitePatterns Zinc finger PHD-type signature. 139 187 IPR019786 -
Pste1g00788 336 PANTHER OS08G0421900 PROTEIN 1 209 - -
Pste1g00788 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 202 IPR013083 -
Pste1g00788 336 SUPERFAMILY FYVE/PHD zinc finger 140 191 IPR011011 -
Pste1g00788 336 ProSiteProfiles Zinc finger PHD-type profile. 136 190 IPR019787 -
Pste1g00788 336 Pfam PHD-finger 139 189 IPR019787 -
Pste1g00788 336 Gene3D - 2 133 IPR043151 -
Pste1g00788 336 FunFam Bromo-adjacent homology (BAH) domain-containing protein 137 205 - -
Pste1g00788 336 Pfam BAH domain 23 132 IPR001025 GO:0003682
Pste1g00788 336 FunFam Chromatin remodeling protein EBS 1 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00788 Pste-Chr1 2455113 2461803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00788 41 140 Core DNA Replication Machinery Family AT4G14700 29.703 4.73e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pste1g00788 BAH 4.9e-23 No_clan