Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00782 TGATGATGGGGAGAACAGGATGCAGTGATGAAAGCAGTTTGAAGAAGGGGCCTTGGACTCCAGAAGAGGATAGAATATTGGTGGATTACATTCGGAAACATGGGCATGGCAGTTGGAGAGCGCTTCCAAAACTTGCAGGATTGAACAGGTGTGGGAAGAGTTGCAGGCTAAGGTGGACTAACTATTTAAGGCCAGATATCAAAAGAGGACAATTCTCCGAGGAAGAAGAGCAACTCATCATCAATTTACATGCAGTTCTTGGGAATAAGTGGTCAGCTATAGCAGGTCATCTGCCAGGTAGGACTGACAATGAAATTAAGAATTTGTGGAACACTCACTTAAAGAAAAAGCTTCTGCAAATGGGGTTAGATCCAGTGACTCATCGTCCAAGATCAGATCACCTTAATCTTTTATCAAATCTCCAACAGCTACTGGCTGCTACAAACATTCTGAGTAATTTCAGTAATACTTGGGACATTAATGCTCTAAGGTGGCAATCAGATGCCACACAAACACAACTATCCAAACTCCAATTGCTACAGAACATACTTCAAGTTCTTGGGGCCACTCCCACCTCAAACCTGGACATACTCAATCCTTTTGGACCATCATCTTCACTGCCAAACGGTTTTCTAAATGAAGTTTTGGAACTGAATCAGTCTAAGCTCCAAAACCTTTACAATGGTTCAACTGGTTTCCCTTCTCAATATCAGCAAAATCTCCAAAGCTTTGAAGCCCCTCATCAGCAGCTAGCTCTACCAACTGGGTATTACCACTTGAATGGAGGAAACAATAGTACTTGCATGAAATCTGAAAGGGTTGATGAACAACCTGATGCCCCAAATTCTTCTTCAACACCATCCAATTCTCTTCCGAATCTAGTTTCAATCTCACCTGAATGTTCCACCGTCAAGCAAATGGAAAACAAGGTAAACCCAAAAGAGTGCTCTGAACCTTCTTCCACTTCAACCAACTTTGAAATGTGGGGAGATTTCATGTATGAAGAAGTAAGCGATGCTTATTGGAAAGATCTCATGGACCAAGAGTCTAACCAGTAACCAGCCATTTTCGATGGTCTATTTTAAAGACAACGGCATTCAAGGCAGGCTTATTACGGCGATTCGATAATAGGAATTATCATTCATCTCTTATGTTCATTTACAAATAGTTGTTGGTTCATATATATGTATTGG 1193 0.4124 MMGRTGCSDESSLKKGPWTPEEDRILVDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGQFSEEEEQLIINLHAVLGNKWSAIAGHLPGRTDNEIKNLWNTHLKKKLLQMGLDPVTHRPRSDHLNLLSNLQQLLAATNILSNFSNTWDINALRWQSDATQTQLSKLQLLQNILQVLGATPTSNLDILNPFGPSSSLPNGFLNEVLELNQSKLQNLYNGSTGFPSQYQQNLQSFEAPHQQLALPTGYYHLNGGNNSTCMKSERVDEQPDAPNSSSTPSNSLPNLVSISPECSTVKQMENKVNPKECSEPSSTSTNFEMWGDFMYEEVSDAYWKDLMDQESNQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00782 351 FunFam MYB-related transcription factor 14 67 - -
Pste1g00782 351 MobiDBLite consensus disorder prediction 277 295 - -
Pste1g00782 351 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 275 - -
Pste1g00782 351 CDD SANT 71 113 IPR001005 -
Pste1g00782 351 MobiDBLite consensus disorder prediction 263 295 - -
Pste1g00782 351 FunFam Transcription factor MYB39 70 131 - -
Pste1g00782 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Pste1g00782 351 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Pste1g00782 351 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Pste1g00782 351 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Pste1g00782 351 Gene3D - 70 117 - -
Pste1g00782 351 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Pste1g00782 351 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pste1g00782 351 SMART sant 67 115 IPR001005 -
Pste1g00782 351 SMART sant 14 64 IPR001005 -
Pste1g00782 351 CDD SANT 17 62 IPR001005 -
Pste1g00782 351 Gene3D - 12 68 - -
Pste1g00782 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00782 Pste-Chr1 2440061 2441499 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00782 2 346 MYB Transcription Factor Family AT5G16770 47.922 2.51e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste1g00782 Myb_DNA-binding 1.5e-16 CL0123