Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00771 CACAAGTGAAGTGTGGTTTTGGGTATAGCAAGAATGTATGGGGATTGCCAAGTTATGTCAAATATGGGAGGGAACGTAGTAGTAAACTCCGATACCCTCTTCTCTTCCTCGATCCAGAACTCTAACTTCAACTTCATCCCCACCATGCCTTTTCAACCTTTTCCTTCCATGAAAGAAGAAGATGGGATCTTGCGAGGGAAGGAAGAGATGGAAAGTGGATCAGGAAGTGAGCAAGTTGAAGACAAGTCAGGGAATGAACAAGAGAGTGAACAACAGGCCACAAAGAAGAAACGTTATCACAGGCACACTGCACGCCAGATCCAAGAAATGGAATCTTTGTTCAAGGAATGTCCTCACCCAGATGATAAGCAGAGGCTGAAACTGAGTCATGAATTAGGCCTGAAACCCCGCCAGGTCAAGTTCTGGTTCCAGAACCGTCGAACCCAGATGAAGGCACAACAAGATCGGGCAGATAATGTAATACTTAGAGCTGAGAATGAGACTCTAAAGAGTGAAAACTATCGGTTACAAGCTGCACTGCGTAATGTTATCTGTCCCAATTGTGGTGGCCCATGCATAATGGGTGCTGATCTGGGCTTGGATGAACACCAACTTCGCATTGAAAATGCCCGGTTAAGAGAAGAGTTAGATCGTGTGTGTTGCCTGACTTCTAGGTACACTGGGCGTCAAATACAAACAATGGCAGCAGGTTCAACTCTAATGGCTCCTTCATTGGATTTGGACATGAACATATATCCAAGGCACTTTTCGGATCCTATTGCTCCATGCACAGAAATGATACCTGTGCCAATGTTGCCTCCTGAAGCTTCACCGTTTTCTGAGGGCGGTCTCCTAATGGAAGAAGAGAAGTCTCTGGCCTTGGAGCTTGCGGCTTCTTCCATGGCTGAACTTACGAAGATGTGTCACACAAACGAGCCACTTTGGATCCGAAGCAGCGAGGGTGAAAGGGAAGTGCTCAATTTTGAAGAGCATGCAAGGATGTTTCATTGGCCTCAGAACCTCAAGCACCGGAGCGAACTAAGGACAGAAGCTACTCGTGACACTGCTGTGGTTATAATGAATAGTGTCACTCTTGTTGATGCTTTCCTTGATGCTCAAAAATGGATGGAATTGTTTCCTACAATTGTTTCTAGAGCAAAAACTGTCCAAATCATATCTTCTGGTGCTTCCGGTCATGCAAGCGGGACTCTTCAGCTGATGTACGCAGAATTTCAAGTTGTTTCTCCTTTGGTGTCCACTCGTGAGACTCATTTTCTTCGGTATTGTCAACAAAATGCTGAGGAGGGAACCTGGGCCATTGTTGATTTTCCTGTTGATAGCTTCCACCAAAATTTTCACCCTTCTTATCCCAGATACTGCAGAAGGTCCTCTGGCTGTGTGATTCAAGATATGCCAAATGGATATTCAAGGGTAACATGGGTTGAGCATGGAAAAGTAGAAGAGAAACCTGTCCATCAGATATTCTGCAACTATGTGTACAATGGAGTGGCCTTCGGAGCCCAGCGTTGGTTAGGAGCTCTGCAGAGACAATGCGAGAGAGTCGCAAGCCTAATGGCCAGAAACATATCAGACCTTGGAGTGATACCTTCACCAGAAGCGCGAAAGAATTTGATGAAACTAGCACAGAGAATGATAAAAACGTTTAGTCTTAACATGAGTAACTCGGGTGGTCAATCATGGACGGCCATATCAGATTCCCCTGAAGACACTGTTAGAATCACAACTAGGAAAATCACAGAGCCTGGCCAACCTAATGGGGTGATTCTAAGTGCAGTTTCAACCACGTGGCTGCCCTATTCTCATACCAAGGTCTTTGATCTCCTCAGGGACGAACGTCATCGATCTCAGATGGATGCTCTTTCAAACGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCCCTTCTTCGCATAAATGTAGCAAGCAACTCATCTCAGAACGTAGAGCTAATGCTGCAAGAGAGTTGCACCGACCAATCTGGAAGCTTAGTAGTGTACACCACCATCGATGTGGATTCGATCCAGCTAGCAATGAGTGGCGAGGACCCATCTTGCATTGCCCTTCTTCCCCAAGGGTTCATGATAGTGCCAATGATATCATCAACCATAGGCATGGGTGGCAACTCATCAGAGGCTCCATGTATGAACTCAGGTTGCCTCCTAACCATGGGGCTGCAAGTTGTGGCAAGCACAATCCCGTCTGCAAAACTGAACCTCTCAAGCGTGACAGCCATCAACAACCACCTTTGCAACACCTTGCACCAGATTGAATCTTCTCTCTCAGGGTCTCATGAGAATGGCAGTTTTGTTTGCACTGAACCCACCACAAGTGCACCTCTGAAGCAGTGAAAAGTCACTGACATGATTCCTTCTTACCCCTCTAGTTGTAGCTTCAGAGTGGAGGTAAGAATGTTTTAAAATAAAGATGGATTATTATTACTATTAGTTAGGGAATTGAAGTGTGTTAGAAAATGAACTTGTGTTGATGAAGGGTAGAGGGACTGAGGGGAGTCAAGAGCGCACCAGATAGTACCCTGGGTTTTCTAGTGATCACTAAGGGTGCTGTGGTTCGGGAATTGACTCTTGTTTCTATGTCACCCTCCACTCTCTTCATTTCAATTATGCTTATCATGCATCATTCAACTTGATTAACGTAATTATTATTTCACTTCTCTTCCAC 2728 0.4527 MYGDCQVMSNMGGNVVVNSDTLFSSSIQNSNFNFIPTMPFQPFPSMKEEDGILRGKEEMESGSGSEQVEDKSGNEQESEQQATKKKRYHRHTARQIQEMESLFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMKAQQDRADNVILRAENETLKSENYRLQAALRNVICPNCGGPCIMGADLGLDEHQLRIENARLREELDRVCCLTSRYTGRQIQTMAAGSTLMAPSLDLDMNIYPRHFSDPIAPCTEMIPVPMLPPEASPFSEGGLLMEEEKSLALELAASSMAELTKMCHTNEPLWIRSSEGEREVLNFEEHARMFHWPQNLKHRSELRTEATRDTAVVIMNSVTLVDAFLDAQKWMELFPTIVSRAKTVQIISSGASGHASGTLQLMYAEFQVVSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDSFHQNFHPSYPRYCRRSSGCVIQDMPNGYSRVTWVEHGKVEEKPVHQIFCNYVYNGVAFGAQRWLGALQRQCERVASLMARNISDLGVIPSPEARKNLMKLAQRMIKTFSLNMSNSGGQSWTAISDSPEDTVRITTRKITEPGQPNGVILSAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYTTIDVDSIQLAMSGEDPSCIALLPQGFMIVPMISSTIGMGGNSSEAPCMNSGCLLTMGLQVVASTIPSAKLNLSSVTAINNHLCNTLHQIESSLSGSHENGSFVCTEPTTSAPLKQ 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00771 787 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Pste1g00771 787 ProSiteProfiles START domain profile. 275 512 IPR002913 GO:0008289
Pste1g00771 787 Pfam START domain 285 509 IPR002913 GO:0008289
Pste1g00771 787 FunFam Homeobox-leucine zipper protein HDG1 72 158 - -
Pste1g00771 787 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 81 765 IPR042160 -
Pste1g00771 787 SMART START_1 284 509 IPR002913 GO:0008289
Pste1g00771 787 SMART HOX_1 83 146 IPR001356 GO:0003677
Pste1g00771 787 MobiDBLite consensus disorder prediction 56 84 - -
Pste1g00771 787 SUPERFAMILY Bet v1-like 276 511 - -
Pste1g00771 787 Pfam Homeodomain 85 140 IPR001356 GO:0003677
Pste1g00771 787 Gene3D - 69 153 - -
Pste1g00771 787 CDD START_ArGLABRA2_like 279 508 - -
Pste1g00771 787 SUPERFAMILY Bet v1-like 536 762 - -
Pste1g00771 787 Gene3D - 313 489 IPR023393 -
Pste1g00771 787 SUPERFAMILY Homeodomain-like 72 143 IPR009057 -
Pste1g00771 787 MobiDBLite consensus disorder prediction 768 787 - -
Pste1g00771 787 CDD homeodomain 85 143 IPR001356 GO:0003677
Pste1g00771 787 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Pste1g00771 787 MobiDBLite consensus disorder prediction 56 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00771 Pste-Chr1 2412925 2418027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00771 8 768 Homeobox Transcription Factor Family AT5G46880 57.022 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste1g00771 START 5.9e-37 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00771 1 2412925 2418027 Pste1g00771 1 2412925 2418027 ECH
Pste4g01431 4 10677421 10681898 Pste1g00771 1 2412925 2418027 ECH
Pste3g02608 3 19030992 19037998 Pste1g00771 1 2412925 2418027 ECH
Pste1g00771 1 2412925 2418027 Pste4g01874 4 13909330 13914962 ECH
Pste1g00771 1 2412925 2418027 Pste4g01431 4 10677421 10681898 PCT