LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste1g00728	GTCCTTTGCTTTTATGCTTAGCTGCTCTGATTTCTTCATCTTTGATTAGGAAACTGCTTCATGTCTATAATGCCGAAAACATCACAGGTTATTAGATGCAAAGCTGCGATATGCTTGGGGATAGGAAAAGGTGTGACGGTGGAAGAGATTGAAGTAGACCCACCCAAAGCAACAGAAGTTCGAGTTAAGATGCTTTGTGCCAGTATATGCTCCACAGACATCTCTAGCACCAAAGGATTCCCACATACCAATTTTCCTATAGCACTTGGTCACGAAGGAGTTGGCGTGATAGAGAGTGTTGGTGATGAAGTGAGAAATCTGAAAGAAGGAGATGTGGTAATTCCGACATACATAGGCGAATGTCAGGAATGTGAGAATTGTGTTTCAGATAAAACCAATTTGTGTCTTACGTACCCAGTAAGATGGACAGGTCTAATGCCAGATAACACTTCAAGGATGTCCATGGGAGGACAGAGGGTATACCATGTTTTAAGTTGTGCGACATGGTCAGAGTACACGGTTAGTGATGCCAACTACGTTCTCAAAGTTGATCCAACCATTGATCCAGCCCATGCCAGTTTCATCTCATGTGGCTTTTCAACTGGATTTGGAGCTGCTTGGAAGGAAGCAAAGATTGAAAGTGGATCCACTGTAGCTGTTTTCGGTCTTGGGGCTGTTGGATTAGGGGTTGTAATTGGAGCCAAAATGCAGGGAGCAACTAAGATAATTGGAATTGACATAAACGAGAAAAAAAAAGAGAAAGGACGAGTTTTCGGAATAACTGACTTTATAAATCCGGGTGATTCTGATAAACCTATTTCAGAATTGGTCAAGGAACTAAGTGATGGCATGGGTGTGGACTATTCCTTTGAGTGTACTGGTGTCTCCACTCTACTTTCTGAATCCTTGGAAGCCACCAAAATGGGAACAGGTAAAGCAATAGTAATTGGTGTAGGAACTGAACTCACTTTGCCATTGGGTCTTTTTGCCATTCTGCTTGGTAGAACTTTGAAAGGTTCTGAATTCCCTCTTGAAGAACTTGTCACCCATGAGGTCACATTGAAAGAAATAAACAAAGCACTTGAGCTTGTGAAGCAGCCTAATTGTGTGAAAGTTGTCATCAACATGTCATAATAGCGCAATTGAAGGAAGTCTTCAGCAAAACATTCACTTGCCAGTTGCTACTCTTCAATCTTCATCATTATTTTTATGTATTTTGACTTTTTTACAGTTTGATTTATTCATCGTCAGTTGTCGGATTAATTCAACGCCTGCGCGTTTATTGTATACTAGCCAAAACATACGTTAATCCAGAAAATTCAAGCTGTGGGATTCAGATGTTGCTTATGGTTGTTGGAGATCTCATATTACCTAGTGATATGGCTAAATAAAAATATATAATAAAG	1406	0.4033	MSIMPKTSQVIRCKAAICLGIGKGVTVEEIEVDPPKATEVRVKMLCASICSTDISSTKGFPHTNFPIALGHEGVGVIESVGDEVRNLKEGDVVIPTYIGECQECENCVSDKTNLCLTYPVRWTGLMPDNTSRMSMGGQRVYHVLSCATWSEYTVSDANYVLKVDPTIDPAHASFISCGFSTGFGAAWKEAKIESGSTVAVFGLGAVGLGVVIGAKMQGATKIIGIDINEKKKEKGRVFGITDFINPGDSDKPISELVKELSDGMGVDYSFECTGVSTLLSESLEATKMGTGKAIVIGVGTELTLPLGLFAILLGRTLKGSEFPLEELVTHEVTLKEINKALELVKQPNCVKVVINMS	357

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste1g00728	357	FunFam	S-(hydroxymethyl)glutathione dehydrogenase	182	320	-	-
	Pste1g00728	357	SUPERFAMILY	GroES-like	7	194	IPR011032	-
	Pste1g00728	357	Gene3D	-	182	320	-	-
	Pste1g00728	357	PANTHER	ALCOHOL DEHYDROGENASE	9	348	-	-
	Pste1g00728	357	CDD	liver_alcohol_DH_like	11	354	-	-
	Pste1g00728	357	FunFam	alcohol dehydrogenase 1-like isoform X1	21	181	-	-
	Pste1g00728	357	Pfam	Zinc-binding dehydrogenase	205	323	IPR013149	-
	Pste1g00728	357	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	167	321	IPR036291	-
	Pste1g00728	357	Pfam	Alcohol dehydrogenase GroES-like domain	38	162	IPR013154	-
	Pste1g00728	357	ProSitePatterns	Zinc-containing alcohol dehydrogenases signature.	70	84	IPR002328	GO:0008270\|GO:0016491

Showing 1 to 10 of 11 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste1g00728	Pste-Chr1	2282937	2286315	Proximal

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste1g00728	38	319	Monolignol Biosynthesis Gene Families	AT2G21730	28.276	3.39e-14	71.2

Showing 1 to 1 of 1 entries

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste1g00728	1	2282937	2286315	Pste1g00728	1	2282937	2286315	ECH

Showing 1 to 1 of 1 entries