Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00719 TATATACATATACATATTTATGGAAGTGTCAAAAGATGCAAAAAATCAGAGTGTTTCTCTGAACTCATTTTCCTCTCTTCTTCGATTCCACAATTCCTCGCAAAAATTGAGCACGCGAATTTACCATTTCGCCCCTTGCGATCCACGCCTTCGCCTTCGCCTCGATCGATTTCGAGGCAGAAAGAAACTATATACCATAAGATGAGACGAATTAATAAAGAAATTGAAGATGAGGTGCTTCCCAATGATATGAGTGGGGCACAGTTGATTGATGAGAGCTATGAAGAAAGTGCCGGTGTTGTTCTGAAGAAAGGGCCATGGACATCAACTGAAGATGATATTTTGGTGGATTATGTCAAGAAGCATGGGGAGGGGAACTGGAATGCTGTTCAGAAGCACACAGGGCTATTACGTTGTGGAAAAAGTTGTCGGCTGCGATGGGCTAATCACCTAAGGCCAAATTTGAAGAAAGGGGCGTTTACTGCTGAAGAGGAGCGGCTGATTGCTGAACTTCATGCCAAGATGGGAAACAAATGGGCACGCATGGCAGCACATTTGCCTGGTCGCACAGATAATGAGATAAAGAACTACTGGAATACCCGGATCAAGAGACGTCAACGGGCTGGGCTGCCACTTTATCCTCCAGAAGTTAGTTTGCAAGCTTTGGAAGAGAGTCAGCATAGCCAAAGCTCTGGCGGACTTGGTGGTGGCAATAAAATGCATGCTGATTTCTTGCAGAAAAGCGGTTATGATATACATGATGCTATATTTGACAGTCTGAAGGATAATCAGGGGATCTTACCTTATGTGCCTGAGTTTTCTGATATTTCTGTTTATGGCAATATGCTTAAGGGTTATGATTCTCCTCTGTATTGTAGTTTTGTGCCACCAACATCACCTAAACATAAGCGTCTTAAAGAATCAACAATACCATTTATTGATTCCTGTGATATGAAAAAAAATGGTTTATATTCATTTGATCAAATTCAGGAAAATGATTCTGACAAGATTGCACAATCATTTGGCATGCAAGCACCCCTTGATCTTGGTCCCTCCTCGCACAGCTCAATTTGTTACAGCCATTCACTTTCAAATGGCAATTCCTCTACTTCTAAGCCAACTTATGAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAACTTGATTTAGGTAGCTGGGGTACATCTCCCCCACCTACTTTGCTTGAGTCAGTTGATGATTTCTTTCAGTCTCCTACACCAATTAGTACACTGGAGTCAGATTGTTCTTCTCCACAAAATAGTGGCCTGCTGGATGCTTTACTTTATCAGGCAAAGACTCTGACCAGTTCAAAGAACCATTGTTCTGACAAGAGTTCAAATTCATCTACTGCAACCCCTGTTGACAGAGCAGACAGCTCTGCTTTGAATGTGTATGAGACAGAATGGGAAGATTATGCTGACCCTGTATCCCCCTTTGGTGCAACTTCAATATTGAACGAGTGCCCTGCTCTTAGAGCCAAAGCAAATTCATTGGACGAACAGCTACCCATTCAGACCTTTACTGACAACATTCCAAAATTAGAGCCTGTTGACAAGGTTTGGATTCCTAACAGTGAAAATCAATCCTTGCCGCTGTTGAATATTACTCGTCCAGACTTCTTGCTTGCTTCAGATTGGCATGACCTAAGTTCTGTGCATGGCAAGAACCTAGCCATCACAACTGATGCGGCGACCACCTTCCTTGGAGATGATTCAGCCACTGACCATAAGCATATGACTGTGGGAACTTCTAAGTCAAGTCAGGTGTGCGGAATTGGTTCTTGTGCAACGACACTGAATGATATACACGCTGTCTGTCAGCTGTCTGATCTTGGTTAAGAAATTCCCATGAAATGTCTGATTTGAAACTTCTTTACTGAGTAGATTTGTGTTGATTTTTTTCAACATGACTGTCCAATGTCAATATTTCCTGGGCTGAAGCAGATTTTATGAGTGTGATTTATAGTATCAAAAAATGGTCACAGAACTGGTGCTTTCTGGTGGCTTTGTCATTGTTTTT 2047 0.4226 YIHIHIYGSVKRCKKSECFSELIFLSSSIPQFLAKIEHANLPFRPLRSTPSPSPRSISRQKETIYHKMRRINKEIEDEVLPNDMSGAQLIDESYEESAGVVLKKGPWTSTEDDILVDYVKKHGEGNWNAVQKHTGLLRCGKSCRLRWANHLRPNLKKGAFTAEEERLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSLQALEESQHSQSSGGLGGGNKMHADFLQKSGYDIHDAIFDSLKDNQGILPYVPEFSDISVYGNMLKGYDSPLYCSFVPPTSPKHKRLKESTIPFIDSCDMKKNGLYSFDQIQENDSDKIAQSFGMQAPLDLGPSSHSSICYSHSLSNGNSSTSKPTYEAVKLELPSLQYPELDLGSWGTSPPPTLLESVDDFFQSPTPISTLESDCSSPQNSGLLDALLYQAKTLTSSKNHCSDKSSNSSTATPVDRADSSALNVYETEWEDYADPVSPFGATSILNECPALRAKANSLDEQLPIQTFTDNIPKLEPVDKVWIPNSENQSLPLLNITRPDFLLASDWHDLSSVHGKNLAITTDAATTFLGDDSATDHKHMTVGTSKSSQVCGIGSCATTLNDIHAVCQLSDLG 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00719 621 CDD SANT 159 200 IPR001005 -
Pste1g00719 621 FunFam Transcription factor GAMYB 159 205 - -
Pste1g00719 621 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 151 IPR017930 -
Pste1g00719 621 CDD SANT 106 151 IPR001005 -
Pste1g00719 621 MobiDBLite consensus disorder prediction 446 466 - -
Pste1g00719 621 Gene3D - 103 156 - -
Pste1g00719 621 ProSiteProfiles Myb-like domain profile. 152 202 IPR001005 -
Pste1g00719 621 SMART sant 103 153 IPR001005 -
Pste1g00719 621 SMART sant 156 204 IPR001005 -
Pste1g00719 621 Pfam Myb-like DNA-binding domain 157 200 IPR001005 -
Pste1g00719 621 Pfam Myb-like DNA-binding domain 104 151 IPR001005 -
Pste1g00719 621 SUPERFAMILY Homeodomain-like 103 198 IPR009057 -
Pste1g00719 621 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 206 IPR017930 -
Pste1g00719 621 FunFam MYB-related transcription factor 103 156 - -
Pste1g00719 621 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 79 567 - -
Pste1g00719 621 Gene3D - 159 205 - -
Pste1g00719 621 ProSiteProfiles Myb-like domain profile. 102 151 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00719 Pste-Chr1 2253031 2262036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00719 99 620 MYB Transcription Factor Family AT5G06100 44.361 1.51e-128 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste1g00719 Myb_DNA-binding 1.1e-14 CL0123