Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00707 ATGGGTGCTACTGCCTTTAAGATTAATGCGAATTCTGCTTCTACTTTGCCTTTTGGTGGCAATTCGTTATCTTCCTATTCGCTTCGTATTTCTCTGAGACCCGTTTTCCGGAATGCTTTGAGCGCGAGGGTTGCAGGGAAGATTCGGGTCTCTCATGCTCCATGGCCCAATTGCGGGCCTGTTATTGCTTCACTCAATGGTGGTTCTAATGCTGGCTCTGCCTTCCTCAGTGACTCCGAATTTAAGCCATCCTTCGACGAATATTTGAAGGCCATGGAATCTGCCAGAACTGTTAGGAGCAACAAGCCTTCTGCCACTACTCAAAAACAGAAGATGACGCAAAAGGATAAGACTAACGATTTTAATAGTTTTGGATATAAATTTGATTCAAAAGATGGGCTTGAAGCTGCTAAAGAAGATGTGGCATTAAAGGTTGACGGAGCACTTGTGTATAAAAAAGGTTCCTCCCGTAGGGTCAGAAGAACAGCAACTAAAGGATTTAGAAGTGAAAATGATGGGAAAGAAAACAAACTTGAAGTGAAAGCAAAGTACAAAAATGGAGCAAATGTTCGACAAAATGGGCTGTGGAAACACCAGTGTCACACTTTAGAACCAGATTCTGATGATAGCAGTGAGATTAACAAAAGTGGAAGTGGAAGTGGAAGGGTGAGCAAGACCTTAATTAGGTCTAGTTTGAATGGTGGCCATTGGAATGTCAAAGAGAGACGTGATTTATATTCTTCAAAGATGTCGCGAGAAAAGGTTTCTAGTGGCAGACAAAGGGATTACAATAACACACAGGGTAAAATCCCTGACGGAGATGAAGTTGTAGCTATACAAACATTTCACAAAAGAAACCTGGGTAGAAGACCTAGTGAGAACGGAAGTTTGATGAACAGAAATGGACTGTCAAATGTCAAATTGAATCGAAGCCGTACGAGTGTCATTGACAGAGGTTATGATTCTGACAACTTAGAGGTGGACCGAGCAGCATTCGAGAATCTCGAAGACCCAAACAATGTTATCAGAAAGTCACAATTTTCACATAAGGAAATGGAGGAGAAAATCCAAAAGCTAGCCAATTCGTTAAATGGTGCAGATATCAATTTACCTGAATGGGTGTTTTCTAAGATGATAAGAAGTGCAAGGCTTAAATTTAATGACTATTCCATAACAAGGATTATCATAATCTTGGGAAAACTAGGAAACTGGCGGCGAGTCTTACAGGTGATTGAGTGGCTTCAAAAGCGTGATCGTTTCAAGTCTCATAAGCTAAGGCATATATATACTGCTGCTCTTGATGCACTTGGAAAGTCAAGGAGACCTGTAGAGGCACTAAATATATTTCACGCAATGCAGCAACAAATGTCCTCATATCCTGATTTAGTAGCTTATCATAGCATTGCTGTGACTCTTGGACAAGCAGGGCACATGAAGGAACTCTTTGATGTGATTGATATTATGAGATCACCACCTAAGAAGAAGTTCAAAACAGGGATATTTGCGAACTGGGACCCAAGGCTAGAACCAGATATTGTAGTCTATCATGCAGTTCTTAATGCTTGTGTTAGGCGGAAACAATGGGAAGGAGCCTTTTGGGTTTTGCAGCAGTTAAAGAAGCAAAGGCAACAGCCTTCTTGCACAACTTATGGCCTTGTCATGGAGGTGATGTTTTCATGTGGCAAGTATAACTTGGTTCATGATTTTTTCAGAAAACTTCAGAAGTCTTTCATTCCCAATTCATTGACATATAGAGAAAATTATGAGTACCGTAGCGCTCAGAATCTCCAACATCTAAAGGGGAAGATAGACAAGATCTGTAAGGTTGCAAATAAACCACTAGTAGTGACTTACACTGGCTTGATGCAAGCAAGTCTAGACTCTGGAAACATTCAAGATGGGGCTTATATTTTTGAGAAAATGAAGGAAGTTTGTACTCCAAATCTGGTTACTTTTAACATAATGCTGAAATCTTACTTGGAACATGGTATGTTTCAAGAAGCTAAAGCATTGTTTGAGCAGATGTCAGAAAATGCAAGTCGTCTGAGGGGGAATACTGACTACAAAATGCTGGTGGTACCAGATACGTACACTTTCAACACCATGTTAGATGCATGTGTAGCAGAGAAGAGATGGGATTATTTTGATCAAGTCTATCAAAGGATGCTGTACCATGGTTATCACTTCAACCCAAAACGTCATCTGCGAATGATATTGGAGACTTCAAAAGCTGGACAGGAACGACCTTTGGAGATAACATGGAAGCAATTAATTGATATGGGTCGTATTCCACCAACTCCTTTGATGAAGGAGATGTTCTGTGCAAAGCTTGAGAAAAATGACTATTTTGGTGCTCTCACATGTATCACTAGCAATCCCTCAAAAGACTTGCAGCCATTTTCCAAGAAGTCCTGGATGAATCTATTCAAAGAAAATTCTCAACGGTTTCAGAAGGATACGATTGTTAGACTAATGACCGAGATCAGCAATATAGTTTCCGGTAATAATTTGCTAAATCCAACACTTGAGTACTTAATGCAATCATGCAAAGAATTTTTTTTTGCTACTGACCTAAATGCAGCTGGCACATAA 2592 0.4016 MGATAFKINANSASTLPFGGNSLSSYSLRISLRPVFRNALSARVAGKIRVSHAPWPNCGPVIASLNGGSNAGSAFLSDSEFKPSFDEYLKAMESARTVRSNKPSATTQKQKMTQKDKTNDFNSFGYKFDSKDGLEAAKEDVALKVDGALVYKKGSSRRVRRTATKGFRSENDGKENKLEVKAKYKNGANVRQNGLWKHQCHTLEPDSDDSSEINKSGSGSGRVSKTLIRSSLNGGHWNVKERRDLYSSKMSREKVSSGRQRDYNNTQGKIPDGDEVVAIQTFHKRNLGRRPSENGSLMNRNGLSNVKLNRSRTSVIDRGYDSDNLEVDRAAFENLEDPNNVIRKSQFSHKEMEEKIQKLANSLNGADINLPEWVFSKMIRSARLKFNDYSITRIIIILGKLGNWRRVLQVIEWLQKRDRFKSHKLRHIYTAALDALGKSRRPVEALNIFHAMQQQMSSYPDLVAYHSIAVTLGQAGHMKELFDVIDIMRSPPKKKFKTGIFANWDPRLEPDIVVYHAVLNACVRRKQWEGAFWVLQQLKKQRQQPSCTTYGLVMEVMFSCGKYNLVHDFFRKLQKSFIPNSLTYRENYEYRSAQNLQHLKGKIDKICKVANKPLVVTYTGLMQASLDSGNIQDGAYIFEKMKEVCTPNLVTFNIMLKSYLEHGMFQEAKALFEQMSENASRLRGNTDYKMLVVPDTYTFNTMLDACVAEKRWDYFDQVYQRMLYHGYHFNPKRHLRMILETSKAGQERPLEITWKQLIDMGRIPPTPLMKEMFCAKLEKNDYFGALTCITSNPSKDLQPFSKKSWMNLFKENSQRFQKDTIVRLMTEISNIVSGNNLLNPTLEYLMQSCKEFFFATDLNAAGT 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00707 863 FunFam Pentatricopeptide repeat-containing protein 354 500 - -
Pste1g00707 863 PANTHER OS01G0674700 PROTEIN 75 585 IPR044645 GO:0009658
Pste1g00707 863 MobiDBLite consensus disorder prediction 201 224 - -
Pste1g00707 863 MobiDBLite consensus disorder prediction 248 271 - -
Pste1g00707 863 Pfam PPR repeat 428 454 IPR002885 -
Pste1g00707 863 Pfam PPR repeat 697 726 IPR002885 -
Pste1g00707 863 Pfam Pentatricopeptide repeat domain 614 659 IPR002885 -
Pste1g00707 863 Pfam Pentatricopeptide repeat domain 508 557 IPR002885 -
Pste1g00707 863 Coils Coil 349 369 - -
Pste1g00707 863 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 695 729 IPR002885 -
Pste1g00707 863 MobiDBLite consensus disorder prediction 99 118 - -
Pste1g00707 863 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 648 682 IPR002885 -
Pste1g00707 863 Gene3D Tetratricopeptide repeat domain 579 756 IPR011990 GO:0005515
Pste1g00707 863 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
Pste1g00707 863 NCBIfam pentatricopeptide repeat 697 723 IPR002885 -
Pste1g00707 863 NCBIfam pentatricopeptide repeat 650 678 IPR002885 -
Pste1g00707 863 NCBIfam pentatricopeptide repeat 428 461 IPR002885 -
Pste1g00707 863 Gene3D Tetratricopeptide repeat domain 415 578 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00707 Pste-Chr1 2215602 2223208 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00707 428 744 Glycosyltransferase AT1G05670 22.086 1.70e-11 66.2