Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00683 CCTCAGAACCAAAATTTTCCAAACTCTCAACTCTCATCAACCTCCCTCTCTTTCTCTCTCCGTCTGTCTTTCTCTAAACTCTCACCTTCTGCCCTTCACCTCTGACACCCTCTTAATTTTGCTTCCAGTTCCTCTGAGTGATGGGTATGATCTCTCCTCACTCCCATAATTCCTACATTATAGTAATCCTCATCACCTGCTTCTTTCGTCATAAATTCTAGATCAAACTCCACACCTTGATCCTCCCTTTCACTTCTTATGGGTTATGAACTCAAATGAATATGACCCTTTAATCTAAGAAGAAGAAAACTCAACACACAACACACAAACACACACTCCAACCCACCAAAAAGTCCTGTTCCCATGGCGGGTGGCAAGCTTTATGCGGGTTCAAACATGTCACTTCTCCTCCAAAACGAAAGGCTTCCTTGTTCCTCTGAAGTCCTTGAGTCTCTTTGGGCTCACACCTCTAACCCTTCTCCCTTCCAAGGTTCAAAAACTGTGGTTGATTTTGAGAATGTTAGTGGGAGCAGGGTGGCGGATAGGCCCTTCTTTCAAGCTTTGGAGAAGGAAGAGAACTGTGATGAGGATTATGAGGGGTGCTTTCATCAACCGGGGAAGAAGAGGAGGCTCACAAGCGAACAAGTTCAGTTCCTTGAAAGGAACTTTGAGGTAGAGAACAAGCTTGAACCTGAAAGGAAGGTCCAACTTGCAAAGGAGCTTGGCTTGCAGCCAAGGCAAGTGGCTATATGGTTCCAAAACCGAAGGGCAAGGTTCAAGACCAAGCAGCTAGAAAAAGACTATGGTGCATTGAAAGCTAGTTATGACAGACTCAAAGGTGACTATGAAAGTCTTCTTCAAGAGAATGACAAGTTAAAAGCAGAGGTGAATTCTCTGGAGAGCAAATTGATTCTTAGAGATAAAGAGAAGGAGAATTCGGATGACAAGTCATCTCCTGATGCTGTCAATTCACCCCACAAAGAGCCTATGGATTTAATTTCAAATGCAACCTCTGAAAATGGGACCAAAGTCTCACTCCCTATTATGGTAACATGCAAGCAAGAAGATGCCAATTCAGCCAAAAGTGATGTGCTTGATTCGGACAGCCCACATTGCACTGATGGGAACCACCCCTCCTCATTCGTGGAGCCTGCTGATTCCTCCCATGCCTTTGAACCAGACCACTCAGACTTCTCCCAAGATGAAGAGGATAACCTTAGTGAAAACCTTTTGACCCTCCCTTGCTTACCTAAGGTTGAAGAAGCTTGCTATGATCACCCTACTGAAAACTCTTGTAATTTTGGCTTCCAGGTTGAGGATCAAACCTTCTGTTTCTGGCCCTACTGAATCAACCATCCGCTTCCATTGTTATAAAAACTTCGCACTTGTAACCATGTACTAGAAGCAATAAAAATGGTATTACCACTACTACGGAATAAAATGCATTGTGCTCTCAACAAGAAACAATATTAAAAGCTTG 1480 0.4358 MAGGKLYAGSNMSLLLQNERLPCSSEVLESLWAHTSNPSPFQGSKTVVDFENVSGSRVADRPFFQALEKEENCDEDYEGCFHQPGKKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGALKASYDRLKGDYESLLQENDKLKAEVNSLESKLILRDKEKENSDDKSSPDAVNSPHKEPMDLISNATSENGTKVSLPIMVTCKQEDANSAKSDVLDSDSPHCTDGNHPSSFVEPADSSHAFEPDHSDFSQDEEDNLSENLLTLPCLPKVEEACYDHPTENSCNFGFQVEDQTFCFWPY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00683 327 Pfam Homeobox associated leucine zipper 141 182 IPR003106 GO:0006355|GO:0043565
Pste1g00683 327 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Pste1g00683 327 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Pste1g00683 327 SUPERFAMILY Homeodomain-like 77 143 IPR009057 -
Pste1g00683 327 CDD homeodomain 84 142 IPR001356 GO:0003677
Pste1g00683 327 Gene3D - 80 147 - -
Pste1g00683 327 SMART HOX_1 83 145 IPR001356 GO:0003677
Pste1g00683 327 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Pste1g00683 327 FunFam Homeobox-leucine zipper protein HAT5 79 143 - -
Pste1g00683 327 Coils Coil 154 181 - -
Pste1g00683 327 MobiDBLite consensus disorder prediction 183 201 - -
Pste1g00683 327 MobiDBLite consensus disorder prediction 183 219 - -
Pste1g00683 327 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Pste1g00683 327 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Pste1g00683 327 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 68 232 IPR045224 GO:0003700
Pste1g00683 327 MobiDBLite consensus disorder prediction 238 283 - -
Pste1g00683 327 MobiDBLite consensus disorder prediction 267 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00683 Pste-Chr1 2156382 2158431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00683 43 274 Homeobox Transcription Factor Family AT3G01470 42.308 1.35e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste1g00683 Homeodomain 3.9e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00683 1 2156382 2158431 Pste1g00683 1 2156382 2158431 ECH
Pste7g00848 7 7889818 7891475 Pste1g00683 1 2156382 2158431 PCT