Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00621 ATGGGAGGAGCATGCGGTTATGGGAATTTATTTGAAAATGGTTACGGAACAGATACAGTGGCTTTAAGCTCGAGGCTGTTCAACAACGGTTATGCGTGTGGAACCTGCTATCAAATAAAATGTTACAAATCAAGTGCATGTTATAAGAACGTGGGTTTCACCACGGTGACTGCCACCAATTTGTGTCCTCCTAATTGGGCTCAGCCGTCAGACAACGGGGGGTGGTGCAACCCACCGCGAGTGCATTTTGACATGTCGAAGCCTGCCTTCATGAAAATAGCAGAGTGGAAGGCTGGGATAGTGCCAGTTATGTACCGAAGAGTGGCGTGCATGAGGAAAGGAGGGCTTAGGTTCTCTTTCCAGGGAAATGGGTACTGGTTGTTGGTGTATGTGATGAATGTGGGAGGAGGAGGAGATATTTCAAGCATGTGGGTGAAAGGAAGCAGAAGTGGATGGATTAGGATGAGCCACAACTGGGGGGCTTCATATCAAGCATTTGCATCTCTGACTGGCCAATCTCTTTCTTTCAGGATTACCTCATACACCACCAGAGAGACTATTATTGCATGGAATGTTGCTCCCTCTACTTGGAACCTTGGACTAACTTATTTTACTACCCTTAACTTCCGCTAG 633 0.4676 MGGACGYGNLFENGYGTDTVALSSRLFNNGYACGTCYQIKCYKSSACYKNVGFTTVTATNLCPPNWAQPSDNGGWCNPPRVHFDMSKPAFMKIAEWKAGIVPVMYRRVACMRKGGLRFSFQGNGYWLLVYVMNVGGGGDISSMWVKGSRSGWIRMSHNWGASYQAFASLTGQSLSFRITSYTTRETIIAWNVAPSTWNLGLTYFTTLNFR 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00621 210 CDD DPBB_EXPA_N 1 110 - -
Pste1g00621 210 Gene3D - 1 110 IPR036908 -
Pste1g00621 210 Pfam Lytic transglycolase 19 105 IPR009009 -
Pste1g00621 210 PRINTS Expansin signature 54 64 IPR002963 GO:0009664
Pste1g00621 210 PRINTS Expansin signature 114 126 IPR002963 GO:0009664
Pste1g00621 210 PRINTS Expansin signature 90 103 IPR002963 GO:0009664
Pste1g00621 210 PRINTS Expansin signature 14 28 IPR002963 GO:0009664
Pste1g00621 210 PRINTS Expansin signature 73 90 IPR002963 GO:0009664
Pste1g00621 210 PRINTS Expansin signature 161 182 IPR002963 GO:0009664
Pste1g00621 210 PRINTS Expansin signature 126 147 IPR002963 GO:0009664
Pste1g00621 210 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 125 205 IPR007117 -
Pste1g00621 210 Gene3D - 116 210 IPR036749 -
Pste1g00621 210 SMART dpbb_1 19 105 IPR007112 -
Pste1g00621 210 SUPERFAMILY PHL pollen allergen 112 204 IPR036749 -
Pste1g00621 210 SUPERFAMILY Barwin-like endoglucanases 1 133 IPR036908 -
Pste1g00621 210 PANTHER EXPANSIN-A15 1 203 IPR002963 GO:0009664
Pste1g00621 210 Pfam Expansin C-terminal domain 117 194 IPR007117 -
Pste1g00621 210 PRINTS Expansin/Lol pI family signature 23 41 IPR007118 GO:0005576
Pste1g00621 210 PRINTS Expansin/Lol pI family signature 98 114 IPR007118 GO:0005576
Pste1g00621 210 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Pste1g00621 210 PRINTS Expansin/Lol pI family signature 152 166 IPR007118 GO:0005576
Pste1g00621 210 PRINTS Expansin/Lol pI family signature 1 19 IPR007118 GO:0005576
Pste1g00621 210 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 2 115 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00621 Pste-Chr1 2001229 2001945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00621 1 209 Expansin Gene Family AT1G62980 70.813 1.19e-112 320