Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g00592 ATGTCACTATACGGAGAAGATAGACAACACTGGATTATGTTTGGTAGTGTTTCAAATTTCAGAGTTGGTGGTGGTGGCACTTTCAATGGTAATGGGAAAAAGTGGTGGCAAAACTGGTGCTCGTGCAAAGCCAACACTAACCTTCCATGCAAAGACGGACCAAGACCAAAAGCCGTTACGTTCTATCATTGCAACAATTTGAAAGTAACAAACCTGAGGTTTAAAGATGCACCACAAATGCACATTACTTTTGAGAGATGCTTCAATGTTATTGTTTCAAATCTGGGGATCAGAGTACTAGGGAACAACCCCAACACTGATGGAATTCATGTCGCAGAGACGCAAAATATTGTCATAAGCAACATTGACATTGGGACAGGTAAAGCATTGGAAGCTTGGGAGCCCATAACTCAGAAGCTAAAGTCTCCTATGTGGTAG 438 0.4178 MSLYGEDRQHWIMFGSVSNFRVGGGGTFNGNGKKWWQNWCSCKANTNLPCKDGPRPKAVTFYHCNNLKVTNLRFKDAPQMHITFERCFNVIVSNLGIRVLGNNPNTDGIHVAETQNIVISNIDIGTGKALEAWEPITQKLKSPMW 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g00592 145 Gene3D - 2 134 IPR012334 -
Pste1g00592 145 PANTHER - 8 128 - -
Pste1g00592 145 Pfam Glycosyl hydrolases family 28 5 127 IPR000743 GO:0004650|GO:0005975
Pste1g00592 145 SUPERFAMILY Pectin lyase-like 8 127 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g00592 Pste-Chr1 1940197 1941042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g00592 6 141 Glycoside Hydrolase AT3G57510 47.826 6.46e-36 126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g00592 1 1940197 1941042 Pste1g00592 1 1940197 1941042 ECH
Pste1g00592 1 1940197 1941042 Pste3g00450 3 2586211 2587351 PCT